Halomonas sp. 'Soap Lake #7': B2G49_01880
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Entry
B2G49_01880 CDS
T09182
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haso
Halomonas sp. 'Soap Lake #7'
Pathway
haso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2G49_01880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haso03019
]
B2G49_01880
03009 Ribosome biogenesis [BR:
haso03009
]
B2G49_01880
Enzymes [BR:
haso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B2G49_01880
Messenger RNA biogenesis [BR:
haso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B2G49_01880
Ribosome biogenesis [BR:
haso03009
]
Prokaryotic type
rRNA helicases
B2G49_01880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AQU81461
LinkDB
All DBs
Position
467790..469502
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AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELNRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAHVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEAVA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDEVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERPTRDGAPAGKPGARRERSSAPSEGMTRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcctcgccgagcttcggcgatctggctctattgcctgctgtt
ctgtctgctgttgaagcacagggctacgaaattccttcgccgatccaggcgcagacgatt
cctgcgttgctggaaggccgcgatatgctgggccaagcacaaactggtactggtaaaacc
gctgcgtttgcactgccattattgtcgcgtttagaactgaatcgtcgtgagccgcaagtg
ttagtaatggctccgacccgcgagcttgctcagcaggttgccgcctcatttagtaagtat
ggccaaaatcttaaaggtctcgaagtcgctattctttgtggcggccaggagtaccgtgaa
cagttgggcgcccttaagcgtggcgcacatgtagtagtaggcaccccaggtcgtattatc
gatcacctggatcgcggtagcctgaaacttgacggcctctcggcactagtgcttgatgaa
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
ccgaaagatgcgcaacgtgtgttcttctcggccacactgccgaccgaaattgagcgtatt
gttaaccgttatctggttaacccggtaaaagttgcgattgaatcgcgcactactaccggt
gagaacatcgagcagcgcattgtacgcgttgacggtggcgctaagcttgaagctgtagca
cgtatacttgaagttgagccggttgatgccgctatcgtcttcgtacgtacccgtgctgct
tgtactacgttggttgagcaattaaccgcacgtggtgttaacgctgctggcctgtcaggc
gatcttgaccagagcctacgcgaacggaccattacgcgcttgaagcgtggtaaggtcgac
gtattgatagctaccgatgtggctgctcgcggtctagatgtatcgcgtattacccacgtt
attaactacgatctgccgcaagatgcagaagcgtatacccaccgtatcggtcgtaccggt
cgtgcgggccgtagcggtattgcgatcacctttgctggcttccgtgaaggccgtaaagtc
ggctggatggagcaggcaaccggtcagaaaatgactgaaatgccgctgcctgacgaagcc
gctatccgtgctcaccgcgatgaagtgttccaccatcgtgtagtggcagccctgaccaaa
ggcgctgaagaacagcgtgcactggttgagcgtttggtcgaagaaggtcacgacgctgtc
gagctggcttgcgcctttgctgcaatggcccgtgctgacgaagcaccgattggccgcttg
caggctccgcgtaaagagcgtcctacacgtgatggcgcgccagccggtaagccgggtgct
cgtcgcgagcgttcaagcgctcccagcgaaggtatgactcgctatcgcgtttctgttggc
cataaagatggcgtgaagccaggccagttagtgggtgccttggctaacgaaggcggtatt
gagggtgcgcgtatcggtcgtatcgatattcgtaatgccttctcagtggttgagctgccc
agtggcctgccttctactattctagcgaaaatggcccgtgcccgagtggctggccgcccg
ttggaaattagcgaagacagcgctcctgagcgtgcaccacgccgtcgccgtgacgatggt
gacgcgccggttcgtcgccgcgaacgcgcttaa
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