Halomonas sp. 'Soap Lake #7': B2G49_14705
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Entry
B2G49_14705 CDS
T09182
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
haso
Halomonas sp. 'Soap Lake #7'
Pathway
haso03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haso00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B2G49_14705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haso03019
]
B2G49_14705
03400 DNA repair and recombination proteins [BR:
haso03400
]
B2G49_14705
Enzymes [BR:
haso01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B2G49_14705
Messenger RNA biogenesis [BR:
haso03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B2G49_14705
DNA repair and recombination proteins [BR:
haso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B2G49_14705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
T4SS-DNA_transf
Motif
Other DBs
NCBI-ProteinID:
AQU83710
LinkDB
All DBs
Position
3212358..3214193
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AA seq
611 aa
AA seq
DB search
MHGDPHPSALKVLQAVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLR
EGTAIVVSPLIALMQDQVAALQQNGVKAAYLNSSLDYHEAVEVENQLRAGELDLLYVAPE
RLATPRMQMLLEQTRIALFAIDEAHCVSQWGHDFRPEYRQLSQLHQRFPQVPRIALTATA
DVPTRGDIMEHLQLQEAALYNSGFDRPNIRYHIAENQGNAKEQLLRFIREHHDGEAGIVY
CLSRRKVEETAAWLERQGLTALPYHAGLPAGQRQQHQTRFLREDGVIVVATIAFGMGIDK
PDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQDVITLRQMQQDSSAADQQK
RIEQQKLDAMLGLCEIISCRRQALLHYFGDHLDAPCGNCDNCLTPPETWEATVAAQKALS
CVYRTEQRFGVTYLVDVLLGKSNERITRFGHDRISTFGIGKELAANEWKALFRQLIASGY
LSVDMEGHGGIRLTTSARPVLRGEHPLTLRKPSNKPSKAKAARRGSKASATHSHGPLWEA
LRQHRRELAEAQGVPAYVIFHDATLAEMVEQMPQSLEALGAISGIGARKLADYGEEFLSV
IQAHQDTEQNS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgcacggcgatccccacccgtcagccctgaaggtgctacaggcggtatttggctacgac
agctttcgcggcccgcagcaggcgattattgagcatgtgattgccgggggcgatgcgctg
gtgttaatgcccaccggcggcggcaaatcgctgtgctatcagatccctgcgctgctgcgt
gaaggcaccgcgattgtggtctcgccgctgatcgcgctgatgcaggatcaggtggcggca
cttcagcaaaacggggtcaaggcggcctacctcaactccagccttgattatcacgaagcg
gtcgaggtagagaaccaactgcgcgcgggcgagttggatcttttgtatgtggcccccgaa
cggctcgccacgccgcggatgcagatgctgctggaacagacccggattgccctgttcgcc
attgatgaagcccactgcgtctcccaatggggccacgactttcgccccgagtatcgccag
ctctcccagctgcatcagcgctttccccaggtgccgcgcatcgcgcttaccgccaccgcc
gatgtgcccacccggggcgatatcatggagcatctgcagctccaagaggcagcgctgtat
aacagcggctttgaccggcccaatatccgctaccatatcgccgaaaatcagggcaacgcc
aaggaacagctgctgcgctttatccgtgagcaccacgatggcgaggcgggcatcgtctac
tgcctttcccggcgcaaggtggaggagaccgccgcttggctggagcgccaagggctgacc
gcgctgccctaccacgccggacttcccgccgggcagcgccagcaacatcagacccgcttt
ctgcgcgaagatggcgtgattgtggtggccaccatcgccttcggtatgggcatcgacaag
cctgacgtgcgctttgtggcgcacctcaacctgcccaagagcatcgaagcctactaccag
gagaccggccgtgctgggcgcgacggtctacccgccgatgcctggatggcctatgggctc
caagacgtgatcaccctgcgtcagatgcagcaggactccagcgccgccgaccagcaaaag
cgcattgagcagcagaagctagatgccatgctggggctgtgtgaaatcatcagctgccgc
cgccaggcgctgctccactactttggcgatcacctggacgccccctgcggcaactgcgac
aactgcctgaccccgcccgagacctgggaggccaccgtggcggcgcagaaggcgctgtcg
tgcgtctaccgcactgagcagcgcttcggcgtgacctatttggtggatgtactgctgggc
aaaagcaacgaacgaatcacccgttttggccacgaccgcataagcaccttcggtattggt
aaagagctcgcggctaacgagtggaaagcgctgtttcgccagctgatcgccagcggctat
ttaagtgtcgatatggagggccatggcggtattcggctgacgaccagcgcaaggccggta
cttcgcggcgaacaccccctcaccctgcgcaaaccaagcaacaaacccagtaaagccaaa
gccgcccggcggggcagcaaagcctctgccacgcacagccacggcccgctttgggaagcg
ctacgccagcaccgccgggaacttgccgaggcccagggcgtacctgcctatgtgatcttc
cacgacgccaccctggccgaaatggtcgagcagatgccccaaagcctggaggcactgggc
gcaatctccggtatcggcgcgcgcaaactggcggattacggcgaagaattcctgagcgtt
atccaagcgcatcaggacaccgagcagaacagttaa
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