Halomonas sp. 'Soap Lake #7': B2G49_15790
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Entry
B2G49_15790 CDS
T09182
Name
(GenBank) RNA polymerase subunit sigma
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
haso
Halomonas sp. 'Soap Lake #7'
Pathway
haso02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
haso00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
B2G49_15790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haso03021
]
B2G49_15790
Transcription machinery [BR:
haso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
B2G49_15790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_20
HTH_40
HTH_28
HTH_24
HTH_38
HTH_23
Motif
Other DBs
NCBI-ProteinID:
AQU83914
LinkDB
All DBs
Position
3451545..3452045
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AA seq
166 aa
AA seq
DB search
MPTNDSDRLHCLYREHHSWLKSWLVGRLGSASDAADLAHDTFIRLMVTQGATDVRQPRAY
LRTIARGLVVDRYRRQTIERAYLEALALRPEPVAISPEERLQIMETLALVDTTLHQLGDR
TRRIFLAVQLEGLSYGATAEHIGVSITTVKKHLIRAMTQCLLLMEE
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgcccactaatgattcggatcgcctgcactgcctttatcgggagcaccatagctggctg
aaaagctggctggtcggccgccttggctccgccagcgatgcggccgatttggcgcatgac
actttcattcgtctgatggtcacccagggcgccactgacgtacgccagcctcgtgcctac
ctgcgcaccattgcacgaggcttggtggtggatcgctaccgccgacaaactatcgaacgt
gcctacctggaagcgctagcgttacgcccagagcctgtcgctatctcaccggaagagcgc
ctccaaatcatggagacacttgcactggtcgacaccacgctccaccaacttggtgataga
acccggcgtatttttcttgccgtacagctggaagggcttagctatggtgcaacggcggaa
cacattggcgtatccatcaccactgttaaaaagcacctgattcgcgcgatgacccagtgt
ttgctgctgatggaagagtga
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