Halomonas sp. 'Soap Lake #7': B2G49_19960
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Entry
B2G49_19960 CDS
T09182
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
haso
Halomonas sp. 'Soap Lake #7'
Pathway
haso03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
haso00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B2G49_19960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haso03021
]
B2G49_19960
03400 DNA repair and recombination proteins [BR:
haso03400
]
B2G49_19960
Enzymes [BR:
haso01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B2G49_19960
Transcription machinery [BR:
haso03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B2G49_19960
DNA repair and recombination proteins [BR:
haso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B2G49_19960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AQU84660
LinkDB
All DBs
Position
4395505..4399719
Genome browser
AA seq
1404 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKITLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAVQELLKDIDLEEEINHLREEIPQTNSETKIKKLSKRLKLLEAFYHSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSLGHASTIKAAKKMVERELPEVWDILADVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGMVFSDLNEVERAFGTQ
SVSLHARVKVRLDEIDIEEETGERSFHRRIYDTTVGRALLFRILPEGVPFALIDQPMKKK
AISSLINEVYRRAGLKPTVIFADQLMYTGFRLATWSGASIGVNDFVIPEAKTAIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMVGISKETVIDREGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVITETDCGTENGLTLHPIIEGGDIIVPLSQRV
LGRVVAQDVVDPGTEEILIPRNTLLDEKWCAELDTMGVDEIIVRSTITCDTAHGVCASCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRSSAVDSVQVKHGGKVR
LHNIKHVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSVRDGDVVDAGAVVAK
WDPHTHPIIAEVEGKAQFIDLDEGVTMHRSVDEMTGLSSIEVIESAARPMAGRDKRPMVM
LQDAAGEYVSVSGSNTPVQYLLPGNSIISVDDGSTIGVGEVVARIPVEASANKDITGGLP
RVADLFEARKPKESSILAEISGVVSFGKETKGKRRLTITPESGDPFEALIPKWRQIAVFE
GEAVEKGEVISDGPSNPHDILRLLGVAELAKYITAEVQDVYRLQGVGINDKHIEVIVRQM
LRKVEITDSGDSDFITGDQAELVRVLEQNARLEKEGKFPAKYQRLLLGITKASLATESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTHHAERRRKREGVERLF
NPSATEVEQELGAQLTALDSDDDL
NT seq
4215 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtactcaaatcgcaatctcagtccgaagagtttgacgcgatc
aagattaccctggcgtcgccggacatgattcgctcctggtctttcggcgaggtgaagaag
cccgagaccatcaactaccgtacctttaagccggaacgggatggtctgttctgcgccaag
atctttggcccagtgaaagactacgagtgtttgtgcggcaaatataagcgcatgaagcac
cgcggtatcatttgtgagaagtgtggcgttgaagtcaccaaagccgccgtgcgccgtgag
cgcatggggcacattgagctggcatcgccggttgctcacatctggttcctgaagtcactg
ccgtcgcgtatcggcatgttcctcgatatgaccctgcgtgatatcgagcgcgtgctgtac
ttcgaaagctttgttgttatcgacccaggcatgaccacgctggagcgtggtcagttgctg
aacgacgagcagtactttgaagcccttgaagagttcggggacgactttgatgcccgcatg
ggtgccgaagccgttcaagagctactcaaagacatcgatctggaagaagagattaaccac
ctgcgtgaagagattccgcagactaactctgaaaccaagatcaaaaaactctccaagcgc
ttgaagctgcttgaagcgttttaccactctggcaacgcgccagcgtggatggtcatggaa
gtgctacccgtgttgccgccggatcttcgtccgctggtaccgcttgacggtggccgcttc
gcgacctcagatcttaacgacctttaccgtcgtgtgatcaaccgtaacaaccgtctgaag
cgtctgctggacctcaatgcgccggatattatcgtgcgcaacgagaagcgcatgcttcag
gaggcggtggatgcactgctggataacggtcgtcgtggccgcgccatcacgggctctaac
aagcgtccgctgaaatcgctcgccgacatgatcaaaggtaagcagggccgtttccgtcag
aacttgttgggtaagcgtgtcgactactccggccgttcggttattaccgtgggcccgacg
ctgcgtctacaccagtgtggtctgccgaagaaaatggcccttgagctgttcaagccgttt
atctactccaagcttcagtcgctgggccatgcgtccacgattaaagctgccaagaaaatg
gttgagcgtgagctacctgaggtgtgggacatccttgctgatgttatccgcgaacacccg
gtactgctgaaccgtgcgcctacgctgcaccgtttgggcatccaggcgtttgagccgctg
ttgatcgaaggtaaagcgatccagctgcacccgctggtatgtgccgcctacaacgccgac
tttgacggtgaccagatggcggtacacgtaccgctgactttggaagctcagctagaagcc
cgtgcgctgatgatggccaccaataacgtgctgtcacctgctaacggcgagccgatcatc
gtaccgtcccaagacgttgttctgggtctgtactacatgacccgcgaaaagatcaacgcc
aaaggcgaaggcatggtgttctcggacctcaacgaggtagagcgcgccttcggtacacaa
tccgtgtcgctacacgcccgggttaaggtacgtctggacgaaatcgatattgaagaagag
actggcgagcgtagcttccatcgtcgcatctacgatacgacggttggccgcgcgctgctg
ttccgcattctgccagaaggcgtacccttcgcgctgatcgatcagccgatgaaaaagaag
gcgatctccagtctgatcaatgaagtctatcgtcgtgctggtcttaagccgaccgttatc
ttcgctgaccaactgatgtataccggcttccgtctcgcgacctggtccggtgcctctatc
ggtgtaaacgacttcgttatccctgaagcgaaaacggctatcgttgacgcagcggaagct
gaagttaaagagatcgaagaccagttctcttctggcctggtaactgcaggtgagaagtac
aacaaggttatcgatatctggtccaaggccaacgacaaagtcgccaaggcgatgatggtg
ggtatctcgaaagagacggtaattgaccgtgagggcaacgaagttgagcaagactcgttc
aacagcgttttcatcatggccgactccggtgcccgtggttctgccgctcagattcgtcag
ctagccggtatgcgtggcttgatggccaagccggatggctcgatcatcgaaacgcccatc
gtcgccaacttccgtgaaggtctgaacgtacttcagtacttcatctcgacccacggcgca
cgtaaaggtcttgcggatacggcactgaaaacagccaactccggttacctgacccgtcgt
ctggtagatgtggcgcaagacttggttatcaccgagacggattgtggcaccgaaaacggc
ctgacgctgcacccgatcattgaaggtggcgacatcatcgtaccgctgtcgcagcgcgta
ttgggtcgcgttgttgcgcaggacgtggttgatccaggcactgaagaaattctgattccg
cgtaacacgttgctggatgagaagtggtgtgccgagctcgacactatgggtgtggacgag
attatcgttcgctctaccattacctgtgataccgctcacggcgtatgtgcttcttgttac
ggccgtgacctggcccgtggtcatcaggtcaacatcggtgagtctgtgggtgttattgct
gcgcagtcgatcggtgagccgggtacccagttgaccatgcgtaccttccacatcggtggg
gcggcatcgcgttcatctgcagtggatagcgtacaggtgaagcacggcggcaaggttcgt
ctgcacaacatcaagcacgtagagcgtgccgatggcaagctggtagtagtttctcgctcc
agtgccttggcagtagccgatgatcatggccgtgagcgtgagtactacaagctcccttat
ggtgctgaactctctgtacgcgatggtgatgtcgtggatgctggtgcggttgttgccaag
tgggatccgcacacccatccgatcattgctgaagtagaaggtaaggcgcagttcatcgat
cttgacgagggtgtcaccatgcaccgcagcgtcgacgagatgaccggcttgtcctctatt
gaggtgatcgaatctgcagcacgcccgatggctggccgcgataagcgccccatggtaatg
ctgcaagatgctgctggtgaatacgtatcggtatctggctcgaatacacccgtacagtac
ctgctgccgggtaactccattatttccgtcgacgatgggtctaccatcggtgttggtgaa
gtggtggcgcgtattccggttgaggcctcggctaacaaagatattaccggtggtctgccg
cgggttgctgacttgttcgaagcgcgtaagccgaaagagtcctctatcctggcggaaatc
agtggtgtagtgagctttggtaaagagactaagggtaagcgtcgtttgacgattactccg
gagtctggcgatccgttcgaagcgctaatcccgaaatggcgtcaaattgccgtgttcgag
ggtgaagcagtggagaaaggggaggttatctctgatggccccagtaatcctcatgatatc
ttgcgcctcctgggcgtagcggagctggccaagtacatcaccgccgaagtgcaggacgtt
tatcgtctgcagggcgtaggcatcaatgacaagcacatcgaagttattgtgcgtcagatg
ctgcgtaaggtagagatcactgactctggtgactccgacttcattaccggcgaccaggca
gagcttgtgcgtgtacttgagcagaacgcgcggcttgagaaagaaggcaagttcccagcc
aagtatcaacgcttgctgctgggtattaccaaggccagcttggccactgagtcgttcatt
tcagcggcatcgttccaggaaacgacccgcgtactgaccgaagcagcagtgaccggcaag
cgcgactacctgcgcggtctgaaagaaaacgtggtagttggacgtctgattccggcaggt
accggtctgactcaccacgcagagcgtcgtcgcaagcgcgaaggcgtagagcgtctgttc
aacccctcggcgaccgaggtagagcaggagcttggcgctcagttgaccgccctggactca
gacgacgatctgtaa
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integrated database retrieval system
