Halorhabdus sp. SVX81: SVXHr_0188
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Entry
SVXHr_0188 CDS
T09281
Symbol
uvrD
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv03420
Nucleotide excision repair
hasv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SVXHr_0188 (uvrD)
03430 Mismatch repair
SVXHr_0188 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hasv03400
]
SVXHr_0188 (uvrD)
Enzymes [BR:
hasv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SVXHr_0188 (uvrD)
DNA repair and recombination proteins [BR:
hasv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SVXHr_0188 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SVXHr_0188 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
AAA_30
DEAD
AAA_22
Herpes_ori_bp
AAA_11
Sec8_C
Motif
Other DBs
NCBI-ProteinID:
WEL16373
LinkDB
All DBs
Position
208695..210515
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AA seq
606 aa
AA seq
DB search
MTRLFGGPGSGKTTALLDRVEDLLEDDDVDVRDVLVVSYTRAAAAEVRERLAERLDVSPR
SLKGNVCTMHAKAYELLNLSRGDVVGESDKQEFAEEYGIEYEDQYEGGRRRTARSTTIGN
KIIATSQWLQRTRRDVADWYDVPFKWNDEKVRLPPEIDENAQTGNKYTPTWPSDDDRIDV
PEVIRAWRSYKGEHGLVGFADMLERVKQRSLLPSVDYLAIDEFQDITTLQYDVYEEWKAH
VDHALIAGDDDQVVYAWQGADPNLLLEEEGEDVILDTSHRLPSEILEVVQREVTHIDQRQ
EKNLSPRKQGGNVEAVRNPSMLDLVRNVRGTVEEDDGTVMVLFRARYQMFQFVDEFIDEG
IPFRTMTDQRMWTDRLTDYVNGIEALAADEPLTALEGRRLADMLEDTAFGTGERDDLFDD
LEERQEAAETDDLTEIEVEPDLIRDHAPFLPEPPAAADMVRKVTSFQEQTIDAYFAGDYE
GMDPGRVRLGTIHSAKGREADHVFVATDLTEKVVEQMAATVERNEIDVPAVDEFTKHTDP
VPTLTDNERRVFYVGLSRARERLVVLENLVSGAPTLPIDVLLNNEPSEDPEAALASILGE
EAAAVH
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgtctgttcggtgggcctggcagcgggaagacgacggcgttgctcgaccgggtc
gaggacctcctcgaagacgacgacgtagacgttcgggatgtcctcgtcgtctcgtatacg
cgggcagctgccgcggaggttcgcgagcggctcgccgagcgcctcgacgtctcgccgcgc
tcactcaagggcaacgtgtgtacgatgcacgcaaaggcctacgagttgttgaacctctcg
cgtggcgacgtcgtgggcgagtccgacaaacaggagttcgccgaggagtacggcatcgag
tacgaggatcagtacgaaggtggccgacggcgaacggcccgatcgacgacgatcggcaac
aagatcatcgccacgagccagtggctccagcgcactcgccgggacgtcgccgactggtac
gatgtccccttcaagtggaacgacgagaaggtccgactgccgccggagatcgacgagaac
gctcagacgggcaacaagtacaccccgacgtggcccagcgacgacgaccggatcgacgtc
ccggaagtcatccgcgcctggcggtcgtacaagggcgaacacggcctggtcgggttcgcc
gacatgctcgaacgcgtcaagcagcgctcgctgctccccagcgtcgattacctcgccatc
gacgagttccaggacatcacgacgctgcaatacgacgtctacgaggagtggaaagcccac
gtcgaccacgcgctgatcgcgggcgacgacgatcaggtcgtctacgcctggcagggagcc
gaccccaacctcttgctcgaagaggagggcgaggacgtcatcctcgacacctcacatcga
ctcccctcggaaatcctcgaagtcgtccagcgcgaggtcacccatatcgaccagcgccag
gagaagaacctctcgccgcgcaaacaggggggcaacgtcgaggccgtccggaacccgtcg
atgctcgatctcgtccggaacgttcgggggaccgtcgaggaggacgacggcaccgtcatg
gtgttgttccgggcgcgctaccagatgttccaatttgtcgatgagttcatcgacgagggc
atccccttccggacgatgaccgaccagcggatgtggaccgaccgccttacggactacgtc
aacgggatcgaggccctcgcggcggacgaaccgttgacagcgttggaggggcgacggctc
gcggacatgctcgaagacacggccttcgggacgggcgaacgcgacgatctcttcgacgat
ctcgaagaacgacaggaagccgccgagacggacgacctcaccgagatcgaggtcgagccc
gacctcattcgcgatcacgccccgttcctgccggaaccgccggccgccgccgacatggtt
cggaaagtcaccagcttccaggaacagacgatcgacgcgtacttcgccggcgactacgag
gggatggaccccgggcgggttcgcctcggcacgatccacagcgcgaagggtcgggaggcc
gatcacgtcttcgtcgcgacggatctcactgagaaggtcgtcgagcagatggccgcgacc
gtcgagcgcaacgagatcgacgtgcccgctgtcgatgagttcaccaaacacaccgatccg
gttccgacgctgaccgacaacgagcgccgggtcttctacgtcgggctctcccgtgcccgc
gagcgactcgtcgtcctcgaaaacctcgtcagcggcgcgccgacgctgccgatcgacgtc
ctgttgaacaacgaacccagcgaggacccagaggcggctctcgcgtcgattctcggcgag
gaagcggctgccgtccactga
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