Halorhabdus sp. SVX81: SVXHr_0427
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Entry
SVXHr_0427 CDS
T09281
Symbol
sua7-2
Name
(GenBank) Transcription initiation factor TFIIB, Brf1 subunit/Transcription initiation factor TFIIB
KO
K03124
transcription initiation factor TFIIB
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SVXHr_0427 (sua7-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hasv03021
]
SVXHr_0427 (sua7-2)
Transcription machinery [BR:
hasv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
SVXHr_0427 (sua7-2)
Prokaryotic type
Archaeal type
TFB
SVXHr_0427 (sua7-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
A2L_zn_ribbon
Anti-TRAP
Zn_ribbon_tTFIIB
Zn_ribbon_19
HTH_Tnp_ISL3
Trm112p
Auto_anti-p27
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
WEL16608
LinkDB
All DBs
Position
440617..441588
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AA seq
323 aa
AA seq
DB search
MSETNTRTRLDQSTNVAEDEEETEDVNCPECGGNLISDTERGETVCQGCGLVVEEDEIDP
GPEWRAFDAKEKDQKSRVGAPTTNMMHDKGLSTNIDWRDKDAYGNSLGSRQREKMQRLRK
WNERFRTRDSKERNLKQALGEIDRMASALGLPENVRETASVIYRRALDEDLLPGRSIEGV
STASVYAAARQAGVPRSLDELTDVSRVEKDEIARTYRYVVRELGLEVRPADPESYVPRFT
SDLELSEEAERRARELLANAKEEGVHSGKSPVGLAAAAIYAASLLTNEKTTQAAVSEVAD
ISEVTIRNRYHELLEAEQSIPAA
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacaaacaccagaacccgactcgatcagtcgacgaacgtagctgaagacgaa
gaggagaccgaagatgtcaactgccccgagtgtggcgggaacctcatctccgacaccgaa
cgcggcgagaccgtctgccagggctgtggactcgtcgtcgaagaggacgagatcgatccc
ggtcccgaatggcgtgctttcgacgccaaggagaaggaccagaagtcccgcgtcggtgcg
ccgacgacgaacatgatgcacgacaaggggctgtcgaccaacatcgactggcgcgacaag
gacgcctacggaaactcgctgggctcccgacagcgcgagaagatgcagcgcctccggaag
tggaacgagcgcttccggacgcgtgactccaaggagcgcaacctcaagcaggcactcggc
gagatcgaccgcatggcctcggcgcttggactcccggagaacgtccgggagaccgcgtcg
gtcatctatcggcgggcgctcgacgaggatctgcttcccggtcgatcgatcgagggcgtc
tcgacggcctcggtgtacgccgccgcccgccaggccggtgtcccgcggagcctcgacgaa
ctcaccgacgtctcccgggtcgagaaagacgagatcgcccgcacgtatcgctacgtcgtc
cgggaactcggcctcgaagtccgccccgccgatcccgagagctacgtgccccgattcacc
tcggatctcgaactctcagaggaggccgaacggcgtgcgcgggaactgctcgccaacgcc
aaagaggagggcgttcactccggaaagagccccgtcgggctcgccgcggccgcgatctac
gccgcctcgctgttgaccaacgagaagaccacccaggctgccgtcagcgaggttgcggac
atctccgaagtcacgatccggaaccgctatcacgaactgctggaagccgagcagtcgatc
ccggccgcctga
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