Halorhabdus sp. SVX81: SVXHr_0616
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Entry
SVXHr_0616 CDS
T09281
Symbol
ligT
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
hasv
Halorhabdus sp. SVX81
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hasv03016
]
SVXHr_0616 (ligT)
Enzymes [BR:
hasv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
SVXHr_0616 (ligT)
Transfer RNA biogenesis [BR:
hasv03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
SVXHr_0616 (ligT)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
WEL16795
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All DBs
Position
648826..649383
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AA seq
185 aa
AA seq
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MGKRLFVSIDLDGLAEAIAAVQDRFEGASGLNFVDPAQAHVTLKFLGDTDPDRLPELTDE
LTAAVEESGVAPFEARFGGLGAFPSEEYITVVWVGVREGGPAMTALQAAIEDRTVAMGFD
PEDHEFTPHVTVARMDHAGGKEQVQTVLREADPTVGTLDVTEVCLTESVLTDDGPDYSTL
ESFEL
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcgactgttcgtcagcatcgacctcgacggcctcgccgaggcgatcgcggcc
gtccaggatcgcttcgagggtgcttcggggctgaacttcgtcgatcctgcacaggcccac
gtcacgctgaagttcctgggcgataccgacccggaccgcctccccgaactcaccgatgaa
ctcaccgcggcagtcgaagagagcggcgtcgcccccttcgaggcgcgctttggtggcctc
ggcgcgttccccagcgaggagtacatcaccgtcgtctgggtcggcgtccgcgagggcggc
ccggcgatgacagccctccaggccgccatcgaggatcgaaccgtcgcgatgggctttgac
ccggaagaccacgagttcacgccccacgttaccgtcgcccggatggaccacgcgggcggg
aaggaacaggtccagaccgtccttcgcgaggctgatccgaccgttggtacgctcgacgtc
accgaggtctgcctgaccgagagcgtcctcaccgacgatggccccgactattcgacgctc
gaatcgttcgaactgtga
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