Halorhabdus sp. SVX81: SVXHr_0818
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Entry
SVXHr_0818 CDS
T09281
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SVXHr_0818 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hasv03021
]
SVXHr_0818 (rpoB)
Enzymes [BR:
hasv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SVXHr_0818 (rpoB)
Transcription machinery [BR:
hasv03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
SVXHr_0818 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zn_ribbon_NOB1
Zn_ribbon_TOP3B
Zn_ribbon_NUD
DUF5816
Motif
Other DBs
NCBI-ProteinID:
WEL16995
LinkDB
All DBs
Position
845666..847492
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AA seq
608 aa
AA seq
DB search
MSQGRDAKVYVNGSLVGTHPEPNQLADQVRRARRRGEISEMVNVSVKPRTGEVIINADAG
RARRPLLVVEDGEPLISEEEYAAIENGELTFEELVERGFVEFIDAEEEEDILVAVDTDEL
TEKHTHLEVDPQLIFGIGAGMIPYPEHNASPRITMGSGMIKQSLGLPSANYRVRPDTRQH
LLHYPQLSMVKTQTTEQIGYDDRPAAQNFTVAVMSYEGFNIEDALVMNKGSVERALARSH
FFRTYEGEERRYPGGQEDRFEIPDDEVRGARGEDAYTHLDEDGLVNPETKVGENAVLLGK
TSPPRFLEEPDDMGGLSPQKRRETSVTMRSGESGVVDTVTLMEGEDGSKLSKVKVRDERI
PELGDKFASRHGQKGIVGHIAPQQDMPFTEQGVVPDLIINPHALPSRMTVGHILEMIGGK
VGALEGRRVDGTAFTGEDEEDLRDSLEDHGFDSSGKEVMYSGITGEKIEAEIFVGNIFYQ
KLYHMVSNKIHARSRGPVQVLTRQPTEGRAREGGLRIGEMERDVFIGHGAALTLKERLLD
ESDQEWIHVCGQCGMTAVENVDQRRVYCPNCDEETDVHEVEMSYAFKLLLDEMKALGIAP
RIELEDAV
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagggacgcgacgccaaagtctacgtcaacggaagtctcgtcgggacccatccc
gaaccgaaccagctcgccgatcaggtacggagagcccgccgccgcggcgagatcagcgag
atggtcaacgtctcggtgaaaccgcgcaccggcgaagtcatcatcaacgccgacgccggc
cgggcacgtcgcccgttgctggtcgtcgaggacggcgaaccgctgatctccgaggaggag
tacgccgcgatcgagaacggcgaactcaccttcgaggagcttgtcgaacgcgggttcgtc
gagttcatcgacgccgaggaggaagaggacatcctcgtcgccgtcgatacggacgaactc
accgagaaacacacccatctcgaagtcgacccgcagctcatcttcgggatcggtgcaggg
atgatcccctaccccgagcacaacgccagcccgcggattaccatgggttcggggatgatc
aagcagagtctggggctcccgagcgcgaactaccgggtacgcccggacacgcgccagcac
ctgctgcattacccccagctctcgatggtcaagacccagaccaccgaacagatcggttac
gacgaccgccccgcggcacagaacttcacggtcgcggtcatgtcctacgaggggttcaac
atcgaggacgccctcgtcatgaacaaggggtcggtcgagcgtgcgctcgcccgctcgcac
ttcttccggacctacgagggcgaggaacgccgctaccccggcggccaggaggatcgcttc
gagatcccggacgacgaggttcggggtgctcgtggtgaggacgcctacacccacctcgac
gaggacggcctggtcaaccccgagacgaaggtcggcgagaacgccgtcctgctcgggaag
acttcgccgccccggttcctcgaagaaccggacgacatgggtgggctctccccccagaag
cgccgcgagaccagcgtcacgatgcgatccggcgagagcggggtcgtcgacacagtcacc
ctgatggagggtgaggacggctcgaaactctcgaaggtcaaggtccgcgacgagcggatc
ccggaactgggagacaagttcgcctcacggcacggccagaaggggatcgtcggtcacatc
gctccccagcaggacatgccgttcaccgagcaaggtgtcgtcccggacctcatcatcaat
ccccacgccttgccctcgcggatgaccgtcggccacatcctcgaaatgatcggcgggaag
gtcggtgcactcgagggccgacgcgtcgatggcacggccttcacgggcgaggacgaggag
gacctccgggactctctggaggaccacggctttgactcctcgggcaaggaggtcatgtac
tcgggcatcacgggcgagaagatcgaggccgagatcttcgtcgggaacatcttctatcag
aagctctatcacatggtctcgaacaagatccacgcccgctcgcgtgggccggtccaggtg
ctgacccgccagccgaccgaggggcgcgcccgtgagggtggtctccggatcggggagatg
gaacgtgacgtcttcatcgggcacggggccgcactcacgctcaaggagcgcttgctcgac
gagtcagaccaggagtggatccacgtctgtgggcagtgtggcatgaccgccgtcgagaac
gtcgatcaacggcgggtgtattgccccaactgcgacgaggagacagacgtccacgaggtc
gagatgagttacgccttcaaactcctcttagacgagatgaaggccctgggtattgctccg
cggatcgaactggaggacgcagtctaa
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