Halorhabdus sp. SVX81: SVXHr_0966
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Entry
SVXHr_0966 CDS
T09281
Symbol
cdc48
Name
(GenBank) ATPase of the AAA class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SVXHr_0966 (cdc48)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasv03019
]
SVXHr_0966 (cdc48)
03009 Ribosome biogenesis [BR:
hasv03009
]
SVXHr_0966 (cdc48)
04131 Membrane trafficking [BR:
hasv04131
]
SVXHr_0966 (cdc48)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hasv04147
]
SVXHr_0966 (cdc48)
Messenger RNA biogenesis [BR:
hasv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SVXHr_0966 (cdc48)
Ribosome biogenesis [BR:
hasv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SVXHr_0966 (cdc48)
Membrane trafficking [BR:
hasv04131
]
SNARE
SNARE associated proteins
Others
SVXHr_0966 (cdc48)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SVXHr_0966 (cdc48)
Exosome [BR:
hasv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SVXHr_0966 (cdc48)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
AAA_16
RuvB_N
AAA_5
TIP49
AAA_22
AAA_2
AAA_33
AAA_14
NPHP3_N
nSTAND3
RNA_helicase
AAA_28
Mg_chelatase
IstB_IS21
AAA_7
AAA_17
AAA_18
AAA_3
ABC_tran
Sigma54_activat
DUF815
ATPase
Parvo_NS1
AAA_30
TsaE
NB-ARC
AAA_24
AAA_11
SLFN-g3_helicase
NACHT
PhoH
AAA_lid_PRS2_C
IPT
Vps4_C
Motif
Other DBs
NCBI-ProteinID:
WEL17141
LinkDB
All DBs
Position
complement(979680..981908)
Genome browser
AA seq
742 aa
AA seq
DB search
MNEVQLEVAKAYPNDSGRGIARLDPDTLLHLKLSPGDIIEIEGAETTAAKVWRADRQDWN
TDTVRIDGFTRQNADAGIGERVEIRKAEAEKADSLVLAPPEEASVQFGSDAAGMVKRQIL
KRPVVERDIVPVMSSTNHPFMRSPGQAIPLIAVETEPEGVVLITEDTDVELREEPISGYD
KTGGGITYEDIGGLENEIQRVREMVELPMKHPQIFKKLGIEPPSGVLLHGPPGTGKTLLA
KAVANETSASFFSIAGPEIISKYYGESEQQLREIFEDATEESPSIIFIDELDSIAPKRED
VTGEVERRVVAQLLTMMDGLESRGQVVVIAATNRVDSVDPALRRPGRFDREIEIGVPDET
GREEILKIHTRGMPLSDDVDLPGLAEDTHGFVGADIESLTKEAAMKALRRYLPEIDLDEE
DIPPSLIDRMIIKRDDFKGALNEVSPSAMREVLVELPKISWDDVGGLESAKDEVQESIEW
PMTSPEKFHRMGVEPPSGVLLYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGES
EKAIRQTFRKARQVAPTVVFFDELDSLAPGRGGQGSGSNVSERVVNQLLTEMDGLEDMED
VMVIGATNRPDMIDPALIRSGRFDRLVYIGEPDVDGREEILRIHTDESPLSPDVSLRELA
EITEGYVGSDLESIAREAAIQSLRENEDADSIGMAHFRSALEGVRPTVTDDIREYFEQME
DQFKGGGPDSRQPRGSDRIGFQ
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaagttcaacttgaggtcgcgaaggcctacccgaacgactcgggccggggcatc
gcgcgcctcgatcccgatacgctgctgcacctgaagctctcccccggcgacatcatcgag
atcgaaggggccgagaccaccgctgcgaaggtctggcgggcggaccgccaggactggaac
accgacacggtccgcatcgacggcttcacccggcaaaatgccgacgcgggtatcggcgag
cgcgtcgagatccggaaggccgaagccgaaaaggctgactcgctcgtgcttgccccgccc
gaggaagcgagcgtccaattcggctcggacgcggccggcatggtcaaacggcagatcctc
aaacggccggtcgtcgagcgcgacatcgtccccgtgatgtcgagcacgaaccacccattc
atgcgctcgccgggccaggccatcccgctgatcgccgtcgagaccgaacccgagggcgtc
gtcctcatcaccgaggacaccgacgtcgaacttcgggaggagcccatctccggctacgac
aagaccgggggcgggatcacctacgaggacatcggcggcctggagaacgagatccagcgc
gtccgcgagatggtcgaactaccgatgaaacacccccagatcttcaagaaactggggatc
gaaccgcccagcggcgtgctcctgcacggcccgcccgggacgggcaagacgttgctggcg
aaagccgtcgccaacgagacctcggcgagtttcttctcgatcgccggcccggaaatcatc
tcgaagtactacggcgagtccgaacagcagttgcgggagatcttcgaggacgccaccgag
gagtccccgtcgatcatcttcatcgacgaactcgactcgatcgcgcccaaacgcgaggac
gtcaccggcgaggtcgagcgccgcgtcgtcgcccaactcctgacgatgatggacggcctg
gaatcccgggggcaggtcgtcgtcatcgccgcgaccaaccgcgtcgactcggtcgatccc
gcgctccggcggcccggtcgcttcgaccgcgagatcgagatcggcgtgcccgacgaaacc
ggccgcgaggagatcctcaagatccacacccgcgggatgccactctcggacgacgtcgac
ctcccggggctggccgaggacacccacgggttcgtcggcgcggacatcgagagcctgacg
aaggaggccgcgatgaaggcccttcggcggtacctccccgagatcgatctggacgaggaa
gacatcccgccgagccttatcgaccggatgatcatcaagcgtgacgacttcaagggagcc
ctcaacgaggtctcaccgtcggcgatgcgggaagtgctcgtcgagttacccaaaatcagc
tgggacgacgtcggcgggctcgaatcggcgaaagacgaggtccaggagtcgatcgagtgg
ccgatgaccagcccggaaaagttccaccggatgggcgtcgaaccgccatctggagtgttg
ctctatgggccaccggggaccggcaagacgctgatggccaaagccgtcgccaacgagacc
gacgccaacttcatctcggtgcgcgggccacagctactgagcaagtgggtcggcgaaagc
gagaaggccatccgccagaccttccggaaggcccgccaggtcgcgccgacggtcgtgttc
ttcgacgaactcgactcgctggcccccggccgtggcggccagggctcggggtcgaacgtc
tccgaacgcgtcgtcaaccagttgctgacggagatggacggcttagaggacatggaggac
gtcatggtcatcggcgcgaccaaccgcccggacatgatcgaccccgcactcatccgctct
ggtcggttcgatcgcctcgtctacatcggcgaacccgatgtcgacggtcgcgaggagatc
ctccggatccacactgacgagtcgccgctctcacccgacgtctcgctgcgcgaactcgcc
gagatcaccgaaggctacgtcggcagcgacctagagagtatcgcccgcgaggcggccatt
cagtccctccgggagaacgaggacgccgattcgatcgggatggctcacttccggtcggcg
ctggaaggcgtccggccgaccgttaccgacgacatccgagaatacttcgagcagatggaa
gaccagttcaagggcggcggccccgactcgcgccagccccgcggctccgaccggatcggc
ttccagtag
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