Halorhabdus sp. SVX81: SVXHr_1298
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Entry
SVXHr_1298 CDS
T09281
Symbol
tfe
Name
(GenBank) Transcription initiation factor IIE, alpha subunit
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SVXHr_1298 (tfe)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hasv03021
]
SVXHr_1298 (tfe)
Transcription machinery [BR:
hasv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
SVXHr_1298 (tfe)
Prokaryotic type
Archaeal type
TFE
SVXHr_1298 (tfe)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Zn_ribbon_8
Zn_Ribbon_TF
DUF7129
Sigma70_r3
Zn_ribbon_6
Zn_ribbon_LysW
HypA
DUF7560
RUBY_RBDX
DNA_ligase_ZBD
DUF7130
DZR
HSBP1
Cas12f1-like_TNB
Motif
Other DBs
NCBI-ProteinID:
WEL17469
LinkDB
All DBs
Position
complement(1321660..1322184)
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AA seq
174 aa
AA seq
DB search
MAFEEYLEDPVIQKYLHELVGPTGMPVAAAPPDGEVTDEELAEELGLELNDVRRALFILY
ENDLASYRRLRDEDSGWLTYLWTFEYDNIPEQLESEMHDLFEGLEERREYELDHEFYLCE
NCGIRFEFADAMDYSFECPDCGSSLEAMENTALIDAMNERIDELESELNLDIDT
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgaggaatatctcgaggaccccgtgatacagaagtacctccacgagctcgtg
ggaccgacgggcatgccggtcgcggccgcaccgcccgatggcgaggtcaccgacgaggaa
ctcgccgaggaactcggtctagaactcaacgacgttcgccgggcgctgttcattctctac
gagaacgacctggcgagttaccgccggctccgtgacgaggattcggggtggttgacgtat
ctgtggacgttcgaatacgacaacatccccgagcaactcgaatcggagatgcacgacctc
tttgaaggtctcgaggaacggcgtgagtacgaactcgaccacgagttttacctgtgtgag
aactgtggcattcgcttcgagttcgccgacgcgatggactacagcttcgagtgtccggac
tgtggctcctcgctcgaagcgatggagaacacggcgcttatcgacgcgatgaacgaacgg
atcgacgaactcgaaagcgaactcaacctggatatcgacacctga
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