Halorhabdus sp. SVX81: SVXHr_1516
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Entry
SVXHr_1516 CDS
T09281
Symbol
cdc48-2
Name
(GenBank) ATPase of the AAA class, CDC48 family
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
SVXHr_1516 (cdc48-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasv03019
]
SVXHr_1516 (cdc48-2)
03009 Ribosome biogenesis [BR:
hasv03009
]
SVXHr_1516 (cdc48-2)
04131 Membrane trafficking [BR:
hasv04131
]
SVXHr_1516 (cdc48-2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hasv04147
]
SVXHr_1516 (cdc48-2)
Messenger RNA biogenesis [BR:
hasv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
SVXHr_1516 (cdc48-2)
Ribosome biogenesis [BR:
hasv03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
SVXHr_1516 (cdc48-2)
Membrane trafficking [BR:
hasv04131
]
SNARE
SNARE associated proteins
Others
SVXHr_1516 (cdc48-2)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
SVXHr_1516 (cdc48-2)
Exosome [BR:
hasv04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
SVXHr_1516 (cdc48-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_22
AAA_14
TIP49
AAA_5
AAA_33
nSTAND3
NPHP3_N
RNA_helicase
AAA_28
AAA_7
IstB_IS21
Mg_chelatase
NB-ARC
DUF815
AAA_18
AAA_lid_PRS2_C
AAA_24
ATPase
AAA_3
TsaE
ABC_tran
Parvo_NS1
Sigma54_activat
AAA_17
AAA_30
AAA_11
SLFN-g3_helicase
AAA_19
NACHT
PhoH
Zeta_toxin
bpMoxR
NTPase_1
ATPase_2
Bac_DnaA
ATP-synt_ab
Zot
Molydop_binding
Motif
Other DBs
NCBI-ProteinID:
WEL17684
LinkDB
All DBs
Position
complement(1529373..1531637)
Genome browser
AA seq
754 aa
AA seq
DB search
MKLTVKPLKQKDAGRGLAAIDRAAMEQLDLENGDYVVLEGREGRAVARVWPGYPEDTGDG
VVRIDGQLRQEADVGIDDRIDVEKADVKPARSISVALPQNLRVRGNIGPHVRNKLSGQAV
TTGQTVPFSLGLGPVSSVGGQKIPLKIAETDPEGTVVVTEQTEIEVSQQPAEEITGEAPE
DARQTPDVTYEDIGGLDDELEQVREMIELPMRHPELFNQLGIEPPKGVLLHGPPGTGKTL
MAKAVANEIDAFFTTISGPEIMSKYYGESEEQLREMFDEAEENAPSIVFIDEIDSIAPKR
DDTSGDVERRVVAQLLSLMDGLEERGDVIVIGATNRLDALDPALRRGGRFDREIEIGVPD
KKGRKEVLQVHTRGMPLNDEIDIDEYAERTHGFVGADIEQLAKESAMNALRRIRPEIDLE
ADEIDAEILENLEITGDDFKAALKGIEPSALREVFVEVPDVSWEDVGGLEDTTERLRETI
QWPLEYPGVFEQMDMESAKGVLLYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKYVG
ESEKGVREVFSKARENAPTVVFFDEIDSIAGERGRNMGDSGVGERVVSQLLTELDGLEDL
EDVVVVATTNRPDLIDAALIRPGRLDRHIHVPVPDEGARRKILEVHTRDKPVAESVDLDD
LAARMDGYVGADIEAVAREAAMAATREFIHSVDPEEVDDSVGNVLIDESHFEHALNEVGP
SVDEETREEYEEIEQRFDKRENELDEPEVGKTFQ
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaccgtcaagccactcaagcagaaggacgccggccgcgggctggccgcgatc
gatcgcgcggcgatggagcaacttgacctggagaacggcgactacgtggttctcgaaggg
cgcgagggccgcgccgtcgcgcgggtctggcccggctatcccgaggacaccggcgacggc
gtcgtccggatcgacggccagctccgccaggaggctgacgtcggcatcgacgatcgaatc
gacgtcgaaaaggccgacgtcaagcccgcccgctcgatctcggtcgccctcccccagaac
ctccgggttcgcggaaacatcggcccccacgtccggaacaaactctccgggcaggccgtg
acgaccggccagacggtccccttctcgctcggactcggcccggtctccagtgtcggtggc
cagaagatcccgctgaagatcgccgagactgatcccgaagggacggtcgtcgtcaccgag
cagaccgaaatcgaggttagccagcagccggccgaggagatcaccggtgaggcacccgag
gacgcccgccagacgcccgacgtgacctacgaggacatcggcgggctcgacgacgagtta
gagcaggtccgggagatgatcgagttgccgatgcgccatcccgaactgttcaaccagctg
ggcatcgagccgccgaagggtgtgctactgcacggcccaccggggaccggcaagacgctg
atggccaaggccgtcgccaacgagatcgacgcgttcttcacgacgatctctggcccggag
atcatgtcgaagtactacggcgagagcgaagagcagctccgggagatgttcgacgaggcc
gaggagaacgccccgtcgatcgtcttcatcgacgagatcgactccatcgcccccaagcgt
gacgacaccagcggcgacgtcgaacgtcgcgtcgtcgcccagctgctcagcctgatggac
ggcctcgaggagcgcggtgacgtgatcgtcatcggcgcgaccaaccgcctggatgcgctc
gatcccgccctccggcgtggcggccgcttcgaccgcgagatcgagatcggcgtgcccgac
aaaaagggtcgcaaggaggtcttgcaggttcacacccgcgggatgccgctgaacgacgag
atcgacatcgacgagtacgccgagcggacccacggcttcgtcggtgctgacatcgagcaa
ctcgcaaaggagagcgcgatgaacgccctccggcgcatccgtccggagatcgacctcgaa
gccgacgagatcgacgccgagatcctcgaaaacctggagatcaccggggacgacttcaaa
gcggcgctgaagggcatcgaaccctccgcgctccgggaagtgttcgtcgaagtcccggac
gtctcctgggaggacgtcggtggactcgaagacaccaccgaacgtctcagagagaccatc
cagtggcccctggagtaccccggggtcttcgagcagatggacatggagtccgccaagggc
gtgctcctgtacggcccacccgggaccggcaagaccttgctcgcgaaggccgtcgccaac
gaggcccagagcaacttcatctcggtgaaggggcccgaactcctgaacaagtacgtcggg
gaaagcgagaagggcgtccgcgaggtcttctcgaaggcccgggagaacgcacccacggtg
gtgttcttcgacgagatcgactcgatcgcgggcgagcgcggccgtaacatgggcgattcg
ggcgtcggcgaacgcgtcgtctcccagctcctgactgaactcgacgggctcgaggatctg
gaggacgtcgtcgtggtggcgaccacgaaccgcccggatctcatcgacgccgcactcatc
cgccccggccggctcgacaggcacattcacgtcccggtacccgacgagggagcacgccga
aagatcctcgaggttcacacccgcgacaagccggtggccgagagtgtcgatctcgacgac
ctggcggcccgtatggacgggtacgtcggtgccgacatcgaagcggtcgcccgcgaggcc
gcgatggctgccacccgggagttcatccacagcgtcgaccccgaggaggtcgacgacagt
gtggggaacgtcctcatcgacgagagtcacttcgaacatgccttaaacgaggtcggcccc
agcgtcgacgaagagacccgtgaggaatacgaggagatcgaacagcgcttcgacaaacgc
gagaacgaactcgacgaacccgaggtcggcaagaccttccagtaa
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integrated database retrieval system
