Halorhabdus sp. SVX81: SVXHr_1821
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Entry
SVXHr_1821 CDS
T09281
Symbol
rtcB
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hasv
Halorhabdus sp. SVX81
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hasv03016
]
SVXHr_1821 (rtcB)
Enzymes [BR:
hasv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SVXHr_1821 (rtcB)
Transfer RNA biogenesis [BR:
hasv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SVXHr_1821 (rtcB)
Prokaryotic type
tRNA splicing ligases
SVXHr_1821 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WEL17984
LinkDB
All DBs
Position
complement(1844533..1845993)
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AA seq
486 aa
AA seq
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MTTYDAGEFTLEKVREYVWEMPQEGDMRVPARVLASEELLDEISDDLSLQQLKNTTHLPG
IQQYALAMPDAHQGYGFPVGGVAGIDAETGVISPGAVGYDINCGVRMLKTNLTYSDIQGR
EEQLVDALFEAIPSGLGGGGVVQTDVDTLEEVLTRGVEWALDEGYAVEDDLAHCEDEGVR
PGADPDAVSKKAKDRGRQQLGSLGSGNHFLEVQRVTDVYREDVAESFGLSEDQIVVLIHC
GSRGLGHQVCTDYLREIEQTHQGLLSQLPDKELAAAPAGSHLAEAYYGAMNAAINFAWVN
RQLIMHRTREVFADVFDRDWRDMEMELLYDVAHNIAKKETHTIEGEDRELFVHRKGATRA
FPAGHPEIPAAYRDVGQPVIIPGSMGAGSYVLRGGEHSMAETFGSTAHGAGRLMSRTEAK
NTYWGEDVQDDLRDQEQIYVKAESGATVAEEAPGVYKDVDEVVRISDELGIGDRVARTFP
VCNIKG
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgactacctacgacgccggtgagttcaccctggagaaggtacgcgagtacgtctgggag
atgccacaggaaggcgacatgcgcgttcccgcgcgggtcctcgccagcgaggaactcctc
gacgagatcagcgacgacctctctctgcagcaactcaagaacactacccacctccccggg
atccagcagtacgccctcgcgatgcccgacgcccaccaggggtatgggttcccggtcggc
ggcgtcgccggcatcgacgccgaaaccggcgttatatcgcctggagcggttggttacgat
attaattgcggcgtaaggatgttgaaaactaaccttacgtacagcgacattcagggtcgc
gaggagcaactcgtcgacgcgctgttcgaggcgatcccgtcggggttgggcggtggcggc
gtcgtccagaccgacgtcgacacactggaggaagtcctcacacgcggcgtcgagtgggcg
ctcgacgagggctacgccgtcgaagacgatctcgcccactgcgaggacgagggggtccgg
ccgggggcagatcccgacgcagtctcgaagaaagcaaaggacaggggccgccagcaactc
gggagtctgggcagcgggaatcacttcctggaagtccagcgcgtcacggacgtctatcgc
gaggacgtcgccgaatctttcggtctcagcgaagaccagatcgtcgtcctgattcactgt
ggctcacgcggcctgggccaccaggtctgtaccgactaccttcgggagatcgaacagacc
caccagggactgctctcgcagttgccggacaaggaactcgcggccgcgcccgccgggagc
catctcgccgaggcgtactacggggcgatgaacgccgcgatcaacttcgcgtgggtcaac
cgccagctcatcatgcaccgaaccagggaggtctttgccgacgtcttcgaccgggattgg
cgcgatatggagatggaactgctgtacgacgtcgcccacaacatcgccaagaaggagacc
cataccattgagggcgaggatcgggaactcttcgtccaccggaagggcgcgacgcgcgcg
tttcccgccggtcacccggaaatcccggccgcctaccgcgacgtcggccagccggtcatc
atccccgggagcatgggggccgggagttacgtcctccgtggcggcgagcattcgatggcg
gagacgttcggttcgacggcccacggcgcgggccggctcatgtcccggacggaagccaag
aacacctactggggcgaggatgtccaggacgacctccgcgatcaggagcagatctacgtc
aaagccgagagcggcgcgaccgtcgccgaggaggccccgggcgtctacaaggacgtcgac
gaggtcgtgcgcatctccgacgaactcgggatcggcgatcgggtcgcccggacgtttccg
gtctgtaatatcaaagggtga
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