Halorhabdus sp. SVX81: SVXHr_2330
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Entry
SVXHr_2330 CDS
T09281
Symbol
rpa1-2
Name
(GenBank) Replication factor A1
KO
K07466
replication factor A1
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv03030
DNA replication
hasv03420
Nucleotide excision repair
hasv03430
Mismatch repair
hasv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SVXHr_2330 (rpa1-2)
03420 Nucleotide excision repair
SVXHr_2330 (rpa1-2)
03430 Mismatch repair
SVXHr_2330 (rpa1-2)
03440 Homologous recombination
SVXHr_2330 (rpa1-2)
03460 Fanconi anemia pathway
SVXHr_2330 (rpa1-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hasv03000
]
SVXHr_2330 (rpa1-2)
03032 DNA replication proteins [BR:
hasv03032
]
SVXHr_2330 (rpa1-2)
03400 DNA repair and recombination proteins [BR:
hasv03400
]
SVXHr_2330 (rpa1-2)
Transcription factors [BR:
hasv03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
SVXHr_2330 (rpa1-2)
DNA replication proteins [BR:
hasv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
SVXHr_2330 (rpa1-2)
DNA repair and recombination proteins [BR:
hasv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
SVXHr_2330 (rpa1-2)
MMR (mismatch excision repair)
SVXHr_2330 (rpa1-2)
DSBR (double strand breaks repair)
HR (homologous recombination)
SVXHr_2330 (rpa1-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_anti-codon
REPA_OB_2
CDC24_OB3
Ssb-like_OB
OB_MEIOB_N
Motif
Other DBs
NCBI-ProteinID:
WEL18481
LinkDB
All DBs
Position
complement(2342754..2344226)
Genome browser
AA seq
490 aa
AA seq
DB search
MGAIEDVYADLDADVSEDDFRDAVEEKVEQMGGLADEETAAMLIAHELTENEAQTVADVQ
AGMEEVRFLAKVLSIGELRTFERDGADEDGRVINVEAADETGSLRLTFWDGEAVAVDEGE
VEVGDVLRVKGRPQEGYNGLEVSVDQAEHDHDASIDVEPGDGETIDALTMGQSNVDVAGV
VLDTEPVRTFERDDGSEGRVANLAIGDETGRVRVTLWDERADRVEEIDAGTTVEVVDGYV
RERDGDLEVHVGEEGAIDELEDGDVEYAPETTPIDDVELEETVDIGGVVRSTDPTRTFDR
DDGSEGQVKNIRIQDDTGDIRVALWGEKADRDLAPGDEVVCADVDIQDGWQDDLEASAGW
GSTVVVLEDGASMATTPDADDTGEGDDSASGDAGGSTGLSAFADDGAGGKTADDEAGERE
PADEDATGDVGGDAEAVEFTGTVVQTGDPVILDDGEETVTVDTGESVRLGEEVTIRGQRR
DGEIDAEELF
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgatagaggacgtatacgcggatctcgacgccgatgtctccgaggacgacttc
cgggacgccgtcgaggagaaggtcgaacagatggggggactggccgacgaggaaacggcg
gcgatgttgatcgcccacgaactcaccgagaacgaggcccagaccgtcgccgacgtccag
gccggcatggaggaggtccgatttctggcgaaggtgctctcgatcggcgaattacggacc
ttcgagcgcgacggggcggacgaggacggccgcgtcatcaacgtcgaggcggccgacgag
accgggagccttcggctgacgttctgggacggggaggccgtcgccgtcgacgagggtgag
gtcgaagtcggcgacgtgctccgggtgaaagggcggccacaggagggctacaacggcctc
gaggtcagcgtcgaccaggccgaacacgatcacgacgcgtcgatcgacgtcgaacccggt
gacggcgagaccatcgacgcgctcaccatgggccagtcgaacgtcgacgttgcgggcgtc
gtcctcgacaccgagccggtcaggaccttcgagcgtgacgacgggtcggaggggcgggtc
gcgaacctcgctatcggcgacgagaccggccgcgtgcgggtgacgctgtgggacgagcgc
gcagaccgggtcgaggagatcgacgccggtacgacggtcgaagtcgtcgacggctacgtt
cgggaacgcgacggcgatctggaggtccacgtcggcgaggagggggcgatcgacgagctc
gaggacggagacgtcgagtacgcgccggagacgacgccgatcgacgatgtcgagttggag
gagacggtcgacatcggcggggtcgtccgctcgacggaccccacgcggacgttcgaccgc
gacgacggctcggaggggcaagtcaagaacatccggatccaggacgataccggcgatatc
cgggtggcgctgtggggcgagaaagccgaccgcgacctcgcaccgggcgacgaggtcgtc
tgtgccgatgtggatattcaggacggctggcaggacgacctcgaagcctcggccggatgg
ggctcgacggtcgtcgtcctcgaagacggcgcgtcgatggcgacgacgcccgacgcggac
gatacgggcgagggcgacgacagtgccagtggggacgccggcggatcgaccggactgtcg
gcgttcgccgatgacggggctggcgggaagacagcggatgacgaggcaggcgagcgcgaa
ccagcggacgaagatgcgacgggtgatgtcggcggggacgccgaagcagtcgagttcacg
ggcactgtcgtccagacgggcgatccggtgatcctcgacgatggcgaggagaccgtcacc
gtcgacaccggcgagtcagtccggctcggcgaggaagttacgattcgggggcaacgacgc
gatggcgagatcgacgccgaggaactgttctag
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