Halorhabdus sp. SVX81: SVXHr_2562
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Entry
SVXHr_2562 CDS
T09281
Name
(GenBank) Superfamily II helicase, archaea-specific
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
hasv
Halorhabdus sp. SVX81
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasv03019
]
SVXHr_2562
Messenger RNA biogenesis [BR:
hasv03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
SVXHr_2562
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WEL18707
LinkDB
All DBs
Position
complement(2574477..2576573)
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AA seq
698 aa
AA seq
DB search
MSQQVTQVDTLFLHENGEDFQVVVQRDGERVLGGRLEVKETEAGPRPARLRVERGSQEDL
RSPDQFVELARRAGRIRVSEQTSARGRRVVRELLDAYQLDAKVVRTCRFCASAGKYSPIT
SETAIDADGEDICPSCAITELERELAYHGDVTGTARDRLEELLLDVQDLERIVNLLSGEL
DPELTKFDEISATVEDIDLVPTDSLSLHPGMQGKLEGQFDELLPVQSLAVENGVLEGQDQ
LVVSATATGKTLIGEMAGIDRVLNGKGKMLFLVPLVALANQKYQDFQAEYGDIVDVSLRV
GSSRIRGDGGGFDPSADIIVGTYEGIDHALRVGHDLGDIGTVVIDEVHTLGEGERGHRLD
GFISRLKYYCEEGGATAARSNRSGGGGSSASAQSGDTQWIYLSATVGNPGSLAESLSAKL
IEFEERPVPIERHVTFADDYEKVDIENKLVKRAFDTKSSKGYRGQTIIFTNSRRRCHEIS
RRLEYSSAPYHAGLDNKRRGEVETMFADQELSAVVTTAALAAGVDFPASQVIFDSLAMGI
EWLTVQEFSQMLGRAGRPDYHDKGTVYLLVEPDGVYHNSQEMTEDEVAFKLLKGEMEPVR
SLYDESAAVEETLANIVVGGSAAKRLNDRMLGEVPTKHALGKLLEFEFIDGLEPTQLGRA
VARHFLSPDRAFLLLDGIRKGKDPFDIVAEVEFADEEL
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccagcaggtcacgcaggtcgatacgctgttcctccacgagaacggcgaggacttc
caggtggtcgtccagcgcgacggcgagcgcgtcctcggcggtcgcctggaggtcaaagag
accgaagcaggcccacggccggcccgactccgggtcgagcggggcagccaggaggacctt
cgcagccccgaccagttcgtggaactcgcccgccgagcggggcggattcgcgtctccgag
cagacctcggcccgcggtcgccgcgtcgtccgcgagctactcgacgcctaccagctggac
gccaaggtcgtccggacctgccgcttttgcgcgtcggctggcaaatactcgccgatcacg
agcgagacggcgatcgacgccgacggcgaggacatctgcccgtcgtgtgcgatcacggaa
ctcgaacgcgagctcgcctaccacggcgacgtgacggggacggcccgcgatcgacttgaa
gaactcttattggacgtccaggacctcgaacgcatcgtcaacctgctgtcgggcgagctc
gacccggaactcacgaagttcgacgagatcagcgccacggtcgaggacatcgatctggta
ccgacggactcgctgtcgttgcacccgggcatgcaggggaaactcgaggggcagttcgac
gaactcctgcccgtccagagcctcgccgtcgagaacggcgttctcgaaggccaggaccaa
ctcgtggtctcggcgaccgcaacggggaagacgctgatcggcgagatggccggcatcgac
cgcgtgctcaacgggaaagggaagatgctgtttctggtcccgctggtggcgctggcaaac
cagaagtaccaggacttccaggcagagtacggcgacatcgtcgacgtgagtctccgggtt
ggatcgagccgaatccgcggggacggcggtgggttcgatcccagcgccgacatcatcgtc
ggtacctacgaggggatcgaccacgcgctgcgcgtgggtcacgacctcggcgacatcggg
acggtcgtcatcgacgaggtccacaccctcggcgagggcgagcgtggccatcgcctcgac
ggcttcatctcgcggctgaagtactactgcgaggaaggcggagcgacggcggcccgctcg
aaccgctccggcgggggcggctcgagtgcgagcgcccagtcgggcgacacccagtggatc
tacctttcggcgaccgtgggcaacccggggtcgcttgccgagtcactctccgcgaaactc
atcgagttcgaggagcgccccgttccgatcgagcgtcacgtcaccttcgccgacgactac
gagaaggtcgacatcgagaacaagctcgtcaagcgggccttcgacacgaaatcctcgaag
ggataccggggccagacgatcatctttaccaactcccggcggcggtgtcacgagatatcc
cgccggctggagtactcctcggccccctaccacgccggcctggacaacaagcgccgcggc
gaggtcgagaccatgttcgccgatcaggaactgtccgcggtcgtgacaacggcagcgctg
gcagcgggtgtcgacttcccggcctcgcaagtcatcttcgactccctggcgatggggatc
gagtggctcaccgtccaggagttctcccagatgctcggccgggctggccggcccgattac
cacgacaagggcacggtgtacctgctggtcgaacccgatggcgtctatcacaacagccag
gagatgaccgaggacgaggtcgcgttcaagctgctgaaaggcgagatggaacccgtgagg
agcctgtacgacgagagcgcggccgtcgaggagacgctggcgaacatcgtggtcgggggg
agtgccgccaaacgcctcaacgaccggatgctcggggaagtgccgacgaaacacgccctc
gggaagctcctggagttcgagttcatcgacgggctggagccgacgcaactgggccgggcc
gtggcgcggcacttcctctcgcccgaccgggcgttcctgttgctcgatggcatccggaag
ggcaaagatccgttcgacatcgtcgcggaagtcgagttcgccgacgaagagctgtaa
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