Halorhabdus sp. SVX81: SVXHr_2648
Help
Entry
SVXHr_2648 CDS
T09281
Symbol
rnj
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hasv
Halorhabdus sp. SVX81
Pathway
hasv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hasv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SVXHr_2648 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hasv03019
]
SVXHr_2648 (rnj)
Messenger RNA biogenesis [BR:
hasv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SVXHr_2648 (rnj)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B
RMMBL
Motif
Other DBs
NCBI-ProteinID:
WEL18792
LinkDB
All DBs
Position
2655436..2656779
Genome browser
AA seq
447 aa
AA seq
DB search
MEIEIATIGGYEEVGRQMTAVRAGEDVVIFDMGLNLSKVLIHDNVETERMHSLDLIDMGA
IPDDRVMSEIEGDVKAIVPTHGHLDHIGAISKLAHRYDAPIMATPFTIELVKQQIQGEEK
FGVENDLVKMDAGATTSIGDDGVELEFVNVTHSIIDAINPVLHTPEGAVVYGLDKRMDHD
PVVGDPIDMERFGELGDEGVLCYIEDCTNAGKKGRTPSESVARRHLKDVMYSMEDYDGGI
VATTFSSHIARVKSLVEFADDIGRQPVLLGRSMEKYSGTAERLDFVEFPEDLGMYGHRKS
VDRTFKRIMSEGKENFLPIVTGHQGEPRAMLTRMGRGDTPYELEEGDKVIFSARVIPEPT
NEGQRYQSETLLKMQGARIYDEVHVSGHLNREGHYEMLNTLEPEHIIPAHQSMGGFAPYV
ELAESEGYELGEDLHVTRNGNVITLVE
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcgagattgccaccattggcggttacgaggaagtgggacgacagatgactgcg
gtgcgggcgggcgaagacgtcgtgatcttcgacatgggcctgaacctctcgaaggtcctg
atccacgacaacgtcgagaccgagcggatgcacagcctggacctgatcgacatgggtgcg
atcccggacgatcgcgtcatgagcgagatcgagggcgacgtcaaggccatcgtgccgaca
cacggccacctcgatcacatcggcgcgatcagcaagctggcccaccgctacgacgccccg
atcatggcgacgccctttacgatcgaactcgtcaaacagcagatccagggcgaggagaag
tttggcgtcgagaacgacctggtgaagatggacgccggcgcgacgacgtcgatcggcgac
gacggcgtcgaactcgagttcgtcaacgtgactcactcgatcatcgacgcgatcaacccg
gtcctccacacgcccgaaggcgcggtcgtctacggactggacaagcgcatggaccacgat
ccggtcgtcggcgacccgatcgacatggagcgcttcggcgaactcggcgacgaaggcgtc
ctctgttacatcgaggactgtacgaacgccggcaagaaggggcgaacgccgagtgagtcc
gtcgcccgtcgccacctcaaggacgtcatgtacagcatggaggactacgacggcggcatc
gtcgcgacgacgttctccagtcacatcgcccgcgtgaagagtctcgtcgagttcgccgac
gacatcggtcgccagcccgttcttctcggtcgctcgatggagaagtactccgggacggcc
gaacggctggacttcgtcgagttccccgaggacctggggatgtacggtcaccgcaagtcc
gtcgaccgcacgttcaagcggatcatgagcgagggcaaggagaacttcctgccgatcgtc
accggccaccagggcgaaccccgtgcgatgctcacccggatgggccgtggcgacacgccc
tacgaactcgaagaaggcgacaaggtcatcttctcggcccgggtcatcccggagccgacc
aacgagggccagcgctaccagagcgagacgctgctgaagatgcagggggcccgcatctac
gacgaggtccacgtctcgggtcacctcaaccgcgagggccactacgagatgctcaacaca
ctcgaacccgaacacatcatcccggcccaccagagcatgggtgggttcgcgccgtacgtc
gaactcgccgagagcgagggctacgagctcggcgaggacctgcacgtcacgcgaaacggt
aacgtgatcaccctggtcgaataa
DBGET
integrated database retrieval system
