Herpetosiphon aurantiacus: Haur_0125
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Entry
Haur_0125 CDS
T00614
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau02020
Two-component system
hau02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Haur_0125
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Haur_0125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hau03021
]
Haur_0125
Transcription machinery [BR:
hau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Haur_0125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_Crp_2
HTH_3
HTH_20
Motif
Other DBs
NCBI-ProteinID:
ABX02777
UniProt:
A9B5F2
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All DBs
Position
157444..158829
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AA seq
461 aa
AA seq
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MEFRMGMSPEALAQQAMSTKASPALIALNNMLVLSTHELQQLIQQELEENPALENVDLEP
DETCSRCGRPLIEMLCLYCVHEDQRLAEAERGDYTAAGEDDEFDPLMMVATPAQLSEVLL
RDLRASLPEQDYFIAEYLVGCLDDQGFLDANTGDIAATLTIDEERVIAVLLKLQDIAPVG
VGARDVQECLLLQLRRLDEEDVRHPYVERVITEFWNDLAEHRYGAIAQALNAEYDAVVEV
REFIREHLRPYPLALSGEGSARTNYIMPDVIIRENEGKLEAEVLMSDRSFLRINPLYQSL
VKRGREAEAEMSSEDRDHLSQYVARAQMFLTNIRQRRETIRRISEFLIETQEDFLRQGVR
FLRPMTRAEVADGIGVHESTVSRATANKYVQLPNRSVIPFSHFFTASLNVKDVLLELVQN
EVRPLTDQELVELLAERGFEVARRTIAKYRNQLNILPSTLR
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atggaatttcgaatgggtatgtcgccggaggcgctagcacaacaagccatgtcaaccaaa
gcctcgcccgctttgattgcacttaacaatatgctggtgctttcaacccacgaattgcaa
caattgatccaacaagagcttgaggagaatcccgctttagaaaatgttgacctagagcca
gatgaaacctgctcgcgttgtggccgccccttgattgagatgctctgtttatactgcgtt
catgaagatcagcgcttggccgaggctgaacgtggcgattataccgctgctggcgaagac
gatgaatttgatccattgatgatggtggcgactcccgctcaacttagtgaggtgttgcta
cgcgatttacgcgcttcgttgcctgagcaagattattttatcgctgaatatttggttggc
tgtttggatgaccaaggctttctcgatgccaataccggcgatattgcggcaaccctgacg
atcgatgaagaacgggtgattgcagtcttgctcaaattgcaagatattgctccagttgga
gttggggcgcgtgatgtgcaagaatgtttgttgttgcagttgcgccgtttggatgaagaa
gatgtgcgccatccctatgttgaacgagtgatcaccgagttttggaatgatttggctgag
caccgctatggggcaattgcccaggcgctcaatgccgaatacgatgctgtggttgaagtg
cgcgagtttattcgtgaacatttgcgcccctatccgttggcgctcagtggcgaaggctca
gcccgcaccaactatattatgcccgatgtgattattcgtgagaacgagggcaaactcgag
gccgaagtgctgatgtcggatcgcagctttttgcggattaatccgctatatcaatcgttg
gtcaaacgtgggcgcgaagctgaggctgaaatgtcttccgaagatcgcgatcatcttagt
cagtatgtggcacgtgctcaaatgttcctgaccaatattcgccaacgccgcgaaactatc
cgtcggattagtgaatttttgattgaaactcaagaagatttcttgcgccaaggcgtgcgg
ttcttgcggccaatgacccgcgctgaagtggctgatggcattggtgtccacgaatcgacc
gtgagccgtgcgaccgccaataaatatgtccaattgcccaatcgctcggtaattccgttt
agccatttcttcacggcctcgttgaatgtcaaggatgtgctgctagaattggtgcaaaat
gaagtgcgaccactcaccgaccaagaattagtcgaattgttggctgaacgtggctttgag
gtggcgcggcgcacgattgccaaatatcgtaatcaattgaatattttgccctcaaccttg
cgctaa
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