Herpetosiphon aurantiacus: Haur_0205
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Entry
Haur_0205 CDS
T00614
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hau
Herpetosiphon aurantiacus
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hau03016
]
Haur_0205
Enzymes [BR:
hau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Haur_0205
Transfer RNA biogenesis [BR:
hau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Haur_0205
Prokaryotic type
tRNA splicing ligases
Haur_0205
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABX02857
UniProt:
A9B6F4
LinkDB
All DBs
Position
complement(239628..240950)
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AA seq
440 aa
AA seq
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MKLNVLLKPWRGDKRFTAIAKYAAALKKSGSKDLQIVAQVEAEFGKPTELARINEQPQPY
KAYGQIGVDIEAAALEQLLLALRLPIAAQGALMPDAHPGFALPIGGVFAAHNAVSPMMVG
VDIGCRMHLTIFAEAPMEIQRQREQLFRDLADVTVFGSGASRKRGPDHPILGIKHWNITA
QTRSLREKAIAQLGTSGGGNHFANIVVGERIGENDLPRQFVGLLTHSGSRGVGYAIAKHY
SNIAVQETARQAHVPKMYEWLNLDSEAGQEYWAAMELAGAFAQANHEVIHRLFAQRTKLQ
PITTIQNHHNFAWREGDLIVHRKGATPAGVGVRGVIPGSMASASYVVEGLGNPEALHSAS
HGAGRLLSRSKARATISPSEAKKVIKAHGVHVEGWSIDESPLAYKDIERVMELQIEADLI
KPLARMKPIAVIMAGEAGEN
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgaaactcaacgttttgctcaagccatggcgtggcgataaacgcttcacggccattgcc
aagtatgccgccgccttgaaaaaaagcggctccaaggatttgcaaattgtggcccaagtc
gaggccgaatttggcaagcccaccgaattagctcggatcaacgagcaaccacaaccctac
aaggcttatggccaaattggggttgatattgaagccgccgctttggagcaattgctgttg
gccttgcgcctgccaattgccgcccaaggagcgttgatgcccgacgctcacccgggcttt
gccttgccgattggcggggtttttgccgctcacaacgccgtctcgcccatgatggttggg
gtcgatatcggctgccgtatgcatctcacgatttttgctgaagcacccatggaaatccaa
cgccagcgtgaacaattattccgtgatttggctgacgtgacggtgtttggctcaggcgca
agtcgcaaacgcgggccagatcatccaattttaggcatcaaacactggaatatcaccgct
caaacccgcagcttgcgcgaaaaagccatcgcgcaacttggcacaagcggcggcggcaac
cactttgccaatatcgtcgttggcgaacgcattggcgaaaacgatttgccgcgccaattt
gttggcttgctgacccatagcggctcgcgcggagttggttatgcgattgccaagcactat
agcaatatcgccgtgcaagaaactgcacgccaagcccatgtgcccaaaatgtacgaatgg
ctcaatttggatagtgaggcaggccaagaatattgggccgcaatggaattagccggagcc
tttgcccaagccaatcatgaagtgatccaccgcttatttgcccaacgcaccaaactccaa
ccaatcaccaccatccaaaatcaccataattttgcttggcgcgaaggcgatttgattgtg
catcgcaagggtgcaacacctgcgggggttggcgtgcggggagtcattccaggcagtatg
gcatcggcctcgtatgtggttgaaggtttgggcaaccccgaagccttgcatagtgcctcg
catggagctggccgcttgttaagccgctccaaagcgcgggccaccatcagcccaagtgaa
gccaaaaaagtcatcaaagctcacggcgtgcatgtcgaaggctggagcatcgatgaatcg
ccattggcctacaaagacatcgaacgagtgatggaattgcaaattgaggccgatttgatc
aaacccctcgcccgtatgaaacctatcgccgtaattatggcaggcgaagcgggcgagaat
taa
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