Herpetosiphon aurantiacus: Haur_0242
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Entry
Haur_0242 CDS
T00614
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Haur_0242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hau03021
]
Haur_0242
03400 DNA repair and recombination proteins [BR:
hau03400
]
Haur_0242
Enzymes [BR:
hau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Haur_0242
Transcription machinery [BR:
hau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Haur_0242
DNA repair and recombination proteins [BR:
hau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Haur_0242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2016
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABX02894
UniProt:
A9B6J1
LinkDB
All DBs
Position
complement(276873..281504)
Genome browser
AA seq
1543 aa
AA seq
DB search
MLEINEFNAIRISLASPEDILSWSHGEVTKPETINYRTLRPERDGLFCEKIFGPTRDWEC
YCGKYKRVRYKGIVCDKCGVEVTRSKVRRDRMGHIKLASPVSHIWFVKGTPSRLGLLLDI
SPRNLERVLYFASYIITDVDDLALGNVREQMKTDFGVRRKDLEEKIIEQRGEKATRLSKD
LAAMDNAMEGTLERTHEQFARQRQEIEDEANALREHLEELIGIDALADEDIVYRGTVLLE
ENEPVRERSLEQLEQLIDQEREKLEQRREYEIENVRLLADGERDQRQSVADAEQERLTTA
LIKQLEDLNKEEKDKLDRLDDIQLHRIISENEYRILRDLAPYTFKADMGAGAVRDIVSMV
DLDELSNQMQAEVQSSSGQRRKKATKRLRVVEAFRKSGNRPEWMIMTVLPVIPPDLRPMV
QLDGGRFATSDLNDLYRRVINRNNRLKRLMELNAPEIIVRNEKRMLQEAVDALIDNGRRG
RPVSGKGKHRLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKKMA
LELFKPFVMRRLVDKGFAHNIKSAKRFVERVRPEVWDVLEEVIKDYLVLLNRAPSLHRLS
IQAFEAKLIEGSAIQLHPLVCAAFNADFDGDQMAVHVPLSRKAQEEARRRMISTYNLLSP
ATGDPIITPSQDIVLGCFYLTQVRPGAKGGGKRFGSIDEALLAYTNGVVHIQAPVWIVIE
DYILPGSDLREKELPSLDGVTPRVLIETSVGRIIFNNALRYQGEPKAGENGYRSPLHYRN
FLVGKSGLKALIADCYRFHSQRENIIADVYQELIERFGPETSEESLLRFYASERTARLAD
RIKALGFKHATLGGMTFSASDVEVPDTKDAIVQETYKKVQDIEKMQRRGLITDDERYREV
VTAWLDATNQIKVEVQRSLNPFGPVSMMSTSGARGNVEQIRQMAGMRGLTTDPTGRIIEL
PITANFREGLSVIEYFISTHGGRKGLADTALRTADAGYLTRRLVDVAQDVIVTIEDCGTT
EGMWIRVSRDILASVEDRIVGRVTVAPVTNPVTGEVIFDTDSEILEDDGKHIANVLKSLD
KEAQAEFGIYVRSVLTCNADYGICRKCYGRNLATGKMVEIGEAVGIIAAQSIGEPGTQLT
LRTFHTGGVATDTDITQGLPRVQEIFEARIPKGKAVLAQIAGRVQIVREEEGIRRLRIVS
EEVYTDEQMLPKDYRVVVKNGDAVEIGNLLAESNVDGDGRAPLVAGLAGNVYVDDDRLVI
QAKDIEEHEEVIAHAARLRVKDGDLVQVGQQMTEGSSDPQEMLQLRGREAVQEYLTNEAQ
KVYRSQGVGINDKHIEVIVRQMLRRVRIEEPGDTELLPGELVELHELNRINASIVSQGGD
PALAVPVLLGITKASLSTDSFLSAASFQETTRVLTEAAVNGKIDYLRGLKENVVIGKLIP
AGTGMEQRRKLAEEAALRVAQITSTPADREVPAATPAPAVMSEPKPAPPRSFDEALNAVT
NIDSGNGPKDDLFAQAMARLQAEEGRKPTLSELLGTDEDEENV
NT seq
4632 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaaatcaatgaattcaatgcaattcgtatcagtctcgcttcaccagaagatatc
ctgagctggtcgcacggtgaagtaaccaaaccagagacgattaattatagaactctgcgt
cctgaacgcgatggcttgttctgtgaaaaaatcttcggacctacccgcgattgggaatgt
tactgtgggaagtacaaacgtgtgcgttataagggcattgtatgcgataaatgtggcgta
gaagtcacccgatccaaagtgcgacgcgatcgcatgggtcatatcaaacttgcctcgcct
gtatcgcatatttggtttgttaaaggcacaccatcgcgtttgggtttacttttagatatc
tcgccacgtaatcttgagcgagtgctttattttgcctcgtatattatcaccgatgtcgat
gatctggcattgggcaatgtacgtgagcaaatgaagaccgactttggcgtgcggcgcaaa
gatctcgaagaaaaaattatcgaacaacgtggcgaaaaggcaacccgtttaagcaaagac
cttgcggcgatggataatgccatggaaggcacgttggagcgaacgcatgaacaatttgcc
cgccaacgccaagaaatcgaagatgaagccaatgcattgcgcgaacacctcgaagaactg
atcggcatcgacgcactagccgatgaagatattgtttatcgtggcacggtgctgctcgaa
gaaaacgagccagtgcgcgaacgcagcttggaacagctcgaacaactgatcgatcaagag
cgcgaaaagcttgaacaacgccgcgaatacgagattgaaaacgtgcgcttgttggccgac
ggcgagcgtgatcaacgccaatcggtggctgatgctgaacaagaacggctaaccacggcc
ttgatcaaacagcttgaagatctcaacaaagaagaaaaagacaagcttgatcgcttggat
gatattcagttgcaccggattatttcggaaaacgaatatcggattctgcgtgatttagcg
ccctacaccttcaaggctgatatgggtgctggcgcggtgcgcgacatcgtatcgatggtt
gatctcgacgaattgtcgaaccaaatgcaagccgaagtccaaagctcatcgggtcaacgc
cgcaagaaagccaccaaacggctgcgcgtggttgaagcattccgcaagagcggcaatcgt
cctgaatggatgattatgaccgtcttgccagtgattccaccagatttgcgcccgatggtc
cagcttgatggtggtcggtttgcgacctctgacttgaacgacctgtatcgacgggtgatc
aaccgcaacaaccggctcaagcgcttgatggagttgaacgctcctgaaatcatcgtgcgc
aacgaaaaacgtatgttgcaagaagcggttgatgccttgatcgacaacggtcgccgtggc
cgcccagtcagtggcaagggcaagcatcgccttaagagcctgagcgatatgctcaaaggc
aagcaaggccgcttccgccaaaacctcttgggtaagcgggttgactactcaggccgttcg
gtgattgtggtcggaccaaccctgcaattgcaccaatgtggtttgcccaagaaaatggcc
ttggaattgttcaagccattcgtcatgcgccgcttggtcgataaaggctttgcccacaac
atcaaatcagccaagcgcttcgttgagcgggttcgccccgaagtgtgggatgtgctcgaa
gaagtcatcaaagactacttggtattgctgaaccgtgcgccttcgctgcaccgtttgtcg
attcaagcctttgaagccaagctgatcgaaggctcggcgattcaattgcaccccttggtg
tgtgccgcattcaacgccgactttgacggcgaccaaatggctgtgcacgtaccattgtcg
cgcaaagcccaagaagaagcccgtcgtcgtatgatttcaacctacaacctgttgtcaccg
gcaactggcgacccaattattacgccatcgcaagacatcgtgttgggttgtttctacctg
acccaagttcgacctggggctaagggtggcggcaagcgctttgggtcaattgacgaagct
ttgttggcctacaccaatggtgttgtacatattcaagcacctgtttggattgtgatcgaa
gattacattctgccaggcagcgatttgcgtgaaaaggaattgccatcgttggatggcgtt
acgccacgcgttttgatcgaaaccagcgttgggcggatcatcttcaacaatgcgttgcgc
taccaaggcgagccaaaagctggcgaaaacggctatcgctcaccattgcactatcgcaac
ttcttggttggcaaatcgggattgaaagccttgatcgccgactgctatcgcttccactca
cagcgcgagaacatcatcgccgacgtgtatcaagaattaattgaacgtttcggccctgaa
acctcggaagaatcgctgttgcgtttctatgcctcagaacggacggcgcgtttggccgac
cggatcaaggccttgggcttcaagcacgcgaccttgggcgggatgaccttctcggcttcg
gacgtagaagtgcctgataccaaagatgcaattgtgcaagaaacctacaagaaagtgcaa
gacatcgaaaagatgcaacgtcgtggtttgattaccgacgacgagcgctatcgtgaagtg
gttacggcgtggctcgatgctaccaaccaaatcaaggttgaagttcaacgctcattgaat
ccattcgggccagtttcgatgatgtcaacctcgggtgcgcgtggtaacgtcgagcaaatt
cgccagatggcggggatgcggggcttgaccactgacccaaccggacggattatcgaattg
ccgattaccgccaacttccgcgaaggcttgagcgttatcgagtacttcatctcaacccac
ggtggtcggaaaggtttggctgataccgccttgcggacagccgacgctggttacttgacc
cgccgtttggtggacgtggcccaagatgtgatcgtgacgatcgaagattgtggcacaacc
gaaggtatgtggattcgggtcagtcgcgatattttggcctcggtcgaagatcggatcgtt
ggccgcgtgacggtggctccggtcactaatcccgtgactggtgaagtcattttcgatacc
gatagcgaaatcttagaagacgatggcaagcacattgcgaatgtgctgaaatcgttggac
aaagaggctcaagctgaatttggcatttatgtccgttcggtactgacctgtaacgccgat
tatggcatttgtcgcaagtgctatggccgcaaccttgccactggcaagatggtcgaaatt
ggcgaagctgtcgggattatcgcggcgcaatcgattggtgagccagggacgcagctgacc
ctgcggacgttccacactggtggtgtggcaactgataccgacatcacccaaggtttgcca
cgggtgcaagaaatcttcgaagcccggattccgaaagggaaagcggtgctggctcagatt
gctggccgtgtccagattgtgcgcgaagaagaaggcattcggcgcttgcggatcgtctct
gaggaagtctataccgacgagcaaatgttgcccaaagattaccgcgtggtggtcaaaaac
ggcgatgctgtcgaaattggcaacctcttggccgaaagcaatgtcgatggcgatggtcgt
gcaccattggtcgcaggcctagctggcaacgtctatgttgacgatgatcgcttggtaatt
caagccaaagacatcgaagaacatgaagaagtgattgcccacgctgctcgtttgcgggtc
aaagatggcgatttggtgcaagttggccaacaaatgaccgaaggctcatctgaccctcaa
gaaatgctgcaattgcgtggtcgcgaagcagttcaagaatacctgaccaacgaagcccaa
aaggtctatcgttcgcaaggtgtggggatcaacgataagcacattgaagtgattgtgcgc
caaatgttgcgacgggtacgcatcgaagagccaggcgatactgaactcttgccaggcgaa
ttggtcgaactccacgaactcaatcggatcaatgcttcgattgtgagccaaggtggtgac
ccagcattggcagtgccagttttgttggggattaccaaggcctcgttgtcaaccgactca
ttcttgtcggcggcctcgttccaagaaaccacgcgcgtgctgactgaagctgccgtcaat
ggcaagatcgattacctgcgtggcttgaaagaaaacgtggttatcggcaagctgattcca
gctggtacggggatggagcaacggcgcaaattggctgaagaagccgccttgcgggttgcc
caaatcaccagcactcccgctgatcgcgaagttccagcagcaacgcctgcgccagcagtg
atgagcgaacccaagcccgcgccaccacgctcattcgacgaagccttgaacgctgtcacc
aacatcgacagtggcaatggaccaaaggatgacttgtttgcccaagccatggctcgtttg
caagctgaagaaggtcgtaaaccaaccctgagcgaactcttaggcaccgacgaagacgag
gaaaacgtctaa
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integrated database retrieval system
