Herpetosiphon aurantiacus: Haur_0812
Help
Entry
Haur_0812 CDS
T00614
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hau
Herpetosiphon aurantiacus
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hau03016
]
Haur_0812
Enzymes [BR:
hau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Haur_0812
Transfer RNA biogenesis [BR:
hau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Haur_0812
Prokaryotic type
tRNA splicing ligases
Haur_0812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABX03460
UniProt:
A9AXP6
LinkDB
All DBs
Position
complement(920575..921750)
Genome browser
AA seq
391 aa
AA seq
DB search
MQYVENIPIWGDPIDQGALSQIKTCALEADAVALMADHHKGYAVPIGGVVAYRDAISPSG
VGYDIACGNKAVLLDLPASEVRAKIKPIMDDIWRSLSFGVGLNNRQSVDHDLFDDPAWQV
PAVKSLKQTARNQLGTIGSGNHYVDLFADELDRTWIGVHFGSRGLGHKTATYFLEAGGAK
DGMDVAPLILPTASDLGEQYLSCMALAGRYAYAGRDWVCAEVARILGATILEEVHNHHNF
AWRETHNGVDLWVVRKGATPAFPGQRGFVGGSMGDISVILEGVDSPEAQTALHSTVHGAG
RVMSRTAARGKINYRTGKVIAPGKISREMMNEWIQQQGVELRGAGTDESPHCYKRLPEVL
NHHANTIKIVHTLQPLGVAMAGENEFDPYKD
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
gtgcagtacgttgagaacattccaatctggggcgatccaatcgatcaaggagccttgagc
cagattaaaacctgtgcgcttgaggccgatgcagtggcgttgatggcagatcatcataag
ggctatgcggtgccaattggcggcgtagtcgcttatcgtgatgcaattagtccttccggc
gttggctacgatatcgcttgcggcaacaaagccgtcttgctcgatctgccagccagcgaa
gttcgcgctaaaatcaagccgattatggacgacatctggcgttcgttgtcgtttggggtt
ggcctgaacaaccgccaaagcgttgatcacgacttgtttgacgacccagcttggcaagtt
ccagcggtcaaaagcttgaaacaaactgcccgcaatcagcttggcacaattggctcaggc
aatcattatgtcgatttattcgctgatgagcttgatcggacatggattggcgtgcacttt
ggctcgcgaggcttaggccacaaaaccgcgacctattttttagaggcaggcggggccaaa
gatggcatggatgttgcgccgttgattttgccaactgcctcggatttgggcgagcaatat
ttgagttgtatggccttggctgggcgctatgcctacgctggccgcgattgggtttgtgct
gaggttgcccgcattttaggcgcaactatccttgaagaagtgcataatcaccataatttt
gcttggcgcgaaactcacaacggcgtggatttgtgggtagtccgcaagggtgcaacgccc
gcctttcctggtcagcgtggctttgttggcggctccatgggcgatatttcggttatttta
gaaggcgttgactcgcccgaagcccaaactgccttgcattcaaccgtgcatggcgctggt
cgggtgatgagccgcaccgctgctcgcggcaaaattaattatcgcacgggcaaagtgatt
gcacctggcaaaatttcgcgcgagatgatgaatgagtggattcaacagcaaggggttgaa
ttacgtggcgcaggcactgatgaatcgccccattgctacaaacgattgcctgaggtgctc
aaccaccacgccaatacaatcaagattgtacataccttgcagccgctgggcgtagcaatg
gctggtgaaaacgagtttgatccgtataaggattga
DBGET
integrated database retrieval system
