Herpetosiphon aurantiacus: Haur_2548
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Entry
Haur_2548 CDS
T00614
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD family
KO
K03086
RNA polymerase primary sigma factor
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Haur_2548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hau03021
]
Haur_2548
Transcription machinery [BR:
hau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Haur_2548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Sigma70_r1_1
Put_DNA-bind_N
DUF2316
Motif
Other DBs
NCBI-ProteinID:
ABX05186
UniProt:
A9B077
LinkDB
All DBs
Position
complement(3274623..3275783)
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AA seq
386 aa
AA seq
DB search
MIDKLLELAAKNQNRIKREDILSVLPEPETNIEALESLYEQIEEAGIEVVDADEAPNVAD
LDLDLDLDSDHDLDGALPDLSDIALDDPVRMYLQEIGQVPLLTAAEEVDLAKKMEVAHAA
NDTLLQDDGMLEHSDRISLKRHIDTGRAARQHLIQANLRLVVSIAKKYTSYGLTMMDLVQ
EGNIGLMRAVEKFDYTKGHKFSTYATWWIRQAITRAIADQSRTIRLPVHMGEAISQVKRT
SHKLQQTMQREPTPEEIAEAMGITASKVRRTLEASMHPLSLEMPVGQEGEGRMGDFIEDD
RVSTPVDAAAMTMLREQIEEVLQKLPERERKIIQLRYGLKDGRYRTLEEVGLEFGITRER
IRQIEAVALRKLRHPHLGKKLRGYLD
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgattgacaagctactggagcttgcggcaaaaaatcaaaaccgcatcaaacgcgaagac
attctcagcgtgttgccagagccagaaacgaatatcgaagccctcgaaagcctctacgaa
caaatcgaagaagcggggatcgaggttgttgatgcagatgaagcgcccaacgttgccgac
ctcgatctcgatttagatcttgatagtgatcacgacctcgacggagccttgcctgatctt
tcggatattgcgctcgacgacccagtgcgcatgtacttgcaagaaattggtcaagtaccc
ttgctgactgcggcggaagaagtcgatctggccaagaagatggaagtggctcacgccgcc
aacgataccttgctgcaagatgatggcatgcttgaacatagtgatcgaatttcgttaaaa
cgccatatcgatactggccgagcagcccgccaacatttgattcaggctaacttgcgcttg
gtggtttcgattgccaaaaaatatacctcgtatggcttgaccatgatggatctggtgcaa
gagggcaatattggcttgatgcgggcagtcgagaaattcgattacaccaaaggccataag
ttctcgacctacgcgacgtggtggattcgccaagcaattacgcgagcgatcgccgaccaa
agccgcaccatccgcttgcctgtgcacatgggcgaggcaattagccaagttaagcgaacg
tcgcataagttgcaacaaaccatgcagcgcgaaccaacgcccgaagaaatagccgaagcc
atgggcattaccgcctcgaaagtgcgtcgcaccttggaagcctcgatgcacccactttcg
ttggaaatgccggttggtcaagaaggcgaaggccgcatgggcgatttcatcgaggatgat
cgagtttcaaccccagttgatgctgcggccatgaccatgttgcgcgaacaaattgaagaa
gttttgcaaaaattgcctgagcgcgaacgcaaaataattcaattgcgctatggccttaaa
gatggccgctaccgtaccctcgaagaagttggccttgaatttggcattactcgcgaacgg
attcgccaaatcgaagcggtggccttgcgtaaactgcgtcacccccaccttggcaagaaa
ttacgtggctatcttgattaa
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