Herpetosiphon aurantiacus: Haur_4118
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Entry
Haur_4118 CDS
T00614
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Haur_4118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hau03400
]
Haur_4118
DNA repair and recombination proteins [BR:
hau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Haur_4118
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Haur_4118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
AAA_21
AAA_29
RsgA_GTPase
SMC_N
AAA_23
AAA_25
AAA_16
UvrA_DNA-bind
AAA_33
AAA_22
nSTAND1
nSTAND3
APS_kinase
AAA_18
AAA_28
NACHT
DnaJ_CXXCXGXG
cobW
Viral_helicase1
DUF5815
Motif
Other DBs
NCBI-ProteinID:
ABX06750
UniProt:
A9AWJ1
LinkDB
All DBs
Position
complement(5265134..5267992)
Genome browser
AA seq
952 aa
AA seq
DB search
MAEIDSIQIVGARQHNLKNIDLAIPKGKLVVFTGPSGAGKSTLAFDTIYAEGQRRYVESL
SSYARQFLGQLPRPEVDSIRGLAPAIAVAQQTINRSPRSTVGTITEIYDHLRLLYARIGK
PHCPVCGRAIEQQTASQIVDQILGYPDGTRLMILAPLVNEELGSHATVLEQTRRAGFVRV
RVDGAIVDLDEPIELDHRQAHSIDVVVDRLIIRHSEAVSLNDHPDRVRVSDSVETALKTG
AGMVWVQPLDGQQLRYSEHAACPEHGPLASGAIEPRSFSFNSPHGACPICDGLGTVDDFD
RNLLQSQAAQTLGELLSNPLRASTTTYQQYWEETIQGLAEALGSDLEQPVDTMASWALDL
WLEGTIPSDDQLHLSKKLRQQLANWSGLLGWLRQHWQQASEQQRESLSIYRQGTICSACE
GSRLRPEARAVTLQGLAIDQVTAMSIEASFAWVSELPNKLRREREQQIAAPIVREMCLRL
QFLREVGLDYLSLARTAESLSGGEAQRIQLATHIGAGLSGVLYVLDEPSIGLHPRDTERL
LQTLLQLRDLRNSVLVVEHDPAIIAAADWVVEVGPTAGVQGGYIMASGTLEQLIAQPNSQ
TGQYVAGQRQLSLPQTRRKPTHATLMLRGAKQHNLKDLDVAIPLGCLVAITGVSGSGKST
LIHEILYPRLANELHGSRLPVGRHRSLEGYDQLEKVIAVDQTSLGRSGRSNAATYTGIFD
ALRQLFAGTPEAKARGYGASRFSFNLKGGRCEQCRGEGVVSIAMQFLPDLAVTCDACGGL
RYNRETLDIRYRGYTIADVLAMTVGQALSVFERLPALARKLESLVEVGLSYLTLGQPAAT
LSGGEAQRVKLAAELARRGTGRTLYILDEPTTGLYWTDVERLIAILQRLVDTGNSVVVIE
HHLDLIKTADWVIDLGPEGGDTGGRLVVAGTPEVVAMNQASWTGRFLQTVLA
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaattgattcgattcagattgttggcgcacgccagcataatctcaaaaatatt
gatttagccattcccaaaggcaaattggtggtattcaccggcccatcgggggctggcaaa
tcaacactcgcctttgatacgatttatgctgaaggccagcgtcgctatgttgaatcgctt
tcgagctatgcccgccaatttttgggtcaattgccccgacctgaagtggatagcattcgt
ggtctagcgccagcaattgccgtcgcccaacaaacgatcaaccgttcgccgcgctcaacc
gttggcacaatcaccgaaatttatgatcatttgcgcttgttgtatgcgcggattggcaaa
ccgcattgcccagtctgtggccgtgcgattgagcaacaaactgctagccaaatcgtcgat
cagattttgggttatcctgacggcacacgcctgatgattttagcgcccttggtgaatgaa
gaacttggttcgcatgccacggtgcttgagcaaacgcgacgggctggctttgtgcgggta
cgggttgatggcgcaattgttgatcttgatgaaccaattgagttggatcatcgtcaagcc
catagcatagatgtggtggtcgatcggctgattattcgccacagcgaggccgtgagcttg
aatgaccatccggatcgggtacgggtgagcgattcggttgaaacagccttgaaaactggc
gcgggaatggtctgggttcagccgcttgatggtcaacagctgcgttacagcgaacatgct
gcatgccctgaacatgggccattggccagcggcgcgatcgaaccacgcagcttttcattt
aatagcccacatggtgcttgcccgatttgcgatggattaggcacagttgatgatttcgac
cggaacctgttacaatctcaggcagcgcaaacccttggcgaactgctttcgaatccactt
cgcgccagcaccacgacctaccaacaatattgggaagaaaccatccaaggtttagctgaa
gctttgggcagcgatctcgaacagcctgttgacacaatggctagctgggcgttagattta
tggctagaaggcacaattccaagcgatgatcaactacatttaagcaaaaagctacgccaa
cagctcgccaactggtcaggtttgctcggttggttgcgtcaacattggcaacaagcaagc
gaacaacagcgcgaaagcctcagcatctatcgccaaggcaccatttgttcggcctgtgaa
ggttcgcgcttgcgaccagaggcgcgggcagttacactacaggggctagcaatcgatcaa
gttacagcaatgtcgattgaggctagttttgcttgggttagtgaactacccaacaaattg
cggcgcgagcgtgagcaacagattgcagcgccgattgtgcgtgaaatgtgcttgcgttta
cagttcttgcgcgaagttggcctagactatttgagtttggcgcgaactgctgagagccta
tcgggcggcgaggctcaacggattcaattggccacccatattggagctggattatcaggg
gtcttgtatgtcttggatgagccatcgattggcttgcatccacgcgatactgagcgttta
ttacagacattattgcaactacgcgaccttcgcaattcagttttagtagtcgagcatgat
ccagcgattattgctgctgctgattgggtggttgaagttgggccgacagcgggcgtgcaa
ggtggctatattatggccagcggcacgcttgagcaactgatagctcagcccaattcccaa
acaggccagtatgtagctgggcaacggcagctaagcctgcctcaaacacggcgaaagcca
acccatgctacactaatgctacgtggagccaaacagcataatctcaaagatctggatgta
gcgattccattgggatgtttggttgcgattacgggagtatcaggttcggggaaatcgaca
cttattcatgagattctctacccacggctggccaacgaactgcatggaagccgcctgcca
gtgggccgacatcgaagccttgaaggctatgatcaacttgaaaaagtgattgcagttgat
caaacgtcactggggcgctcaggtcgttccaacgctgccacctacaccggtattttcgac
gcattgcgtcaattgtttgctgggacacctgaagccaaagcgcggggctatggagccagt
cgattttcctttaatcttaagggagggcggtgcgaacaatgtcgcggcgaaggtgtggta
tcgattgccatgcaatttctgccagatctagcggtgacctgcgacgcatgcggcgggttg
cgttataatcgagaaacccttgatattcgctatcgtgggtataccattgctgatgtgctc
gccatgaccgtaggccaagccttaagcgtttttgaacggctaccggctttggcgcgaaaa
ctagagagtttggttgaggtcgggttaagctatttgacgttagggcagccagcggcgact
ctttcgggaggcgaagcgcaacgggtaaaactggcggcagagctagcgcgtcgaggaaca
ggccgaaccctgtacatccttgatgaaccaaccaccggattatattggacggatgtcgaa
cggttaattgcgatattgcaacgattggttgatacaggaaacagcgttgtggtgatcgaa
catcatctcgacctgatcaagaccgccgattgggtgatcgatttagggccggaaggtggg
gacactggtggccggctggtagtggctggtacgccggaagtagtcgctatgaatcaagct
tcatggactggccgcttccttcaaaccgtgttagcttga
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