Herpetosiphon aurantiacus: Haur_4553
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Entry
Haur_4553 CDS
T00614
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Haur_4553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hau03019
]
Haur_4553
03400 DNA repair and recombination proteins [BR:
hau03400
]
Haur_4553
Enzymes [BR:
hau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Haur_4553
Messenger RNA biogenesis [BR:
hau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Haur_4553
DNA repair and recombination proteins [BR:
hau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Haur_4553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
RQC
ResIII
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
ABX07184
UniProt:
A9B0G6
LinkDB
All DBs
Position
complement(5828034..5830628)
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AA seq
864 aa
AA seq
DB search
MTLVDPETPLFTFDEAEAQPTALANELTEALREHFGLPGFRSGQQQVIERVMAGRSTLAL
MPTGAGKSLCYQLPALLLPHATIVISPLIALMKDQLDGLPEAVRERATFINSAIPFDEVR
TRLRGLSEGRYKLVYVAPERLRQRQFLYALQQVGISLFVVDEAHCVSLWGFSFRPDYLFI
REALRELGNPLVLGLTATASPATEKAICEQLGDLETVRTNVFRPNLHFELIKASNKEKKQ
AAILSLCSQIDGAIIVYARSRNSCEELAEQLRKTGVVAEAYHAGCPDRDAIQDRFMRGET
RVIVATIAFGMGVDKRDVRAVIHANLPKSLEDYAQEAGRAGRDGQISRCIMLYNFFDKRQ
LKEWLESSHFGVEELRELYKAVLGQIGKGQGTINQAQLMELSGFDETRLRVGLGILEHVG
LVRRHFDLPRVCKLRRGEAPATPEINQLCEWFSLGRWWQDVSSLDLAAALRIAPSQLEPT
LLAWQEQGLLGYEGVAREVLLEVLPSPKDTRERMYQVLKQWRSTQERQLDSLTQYVEASH
CRHRILAAQFGQRLPACGNACDICQSGRITISRPPNVLQPQTMPLVGSNWGNGGAISDHQ
RIMVEAVREHPQQLTSRDLAHILAGSRGYSSHPLFGALAERSFDSIRAEIDVLVDAGTLA
YQGATLVAVVAAPKRTGNQQRDIALQVLATLTRLPYPLGRTGLVRLLKGVSDAKRSPDHG
VLAHATMEQIEVVVEALVEAQLLDRQQQGLYPLLALNSAGRAVLNDPQSLPVLNIQGKRD
SAKDEQLQADGELLLLLKSWRSEQARKLNLPHYMIIPDSVLFDLAAYQPTNTQELSTIKG
IGSQKLAQWGADLLSLITTGKPTN
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgacattggttgatcctgaaacgccgctgtttaccttcgatgaagctgaagcccagccg
acggccttagccaatgagttgaccgaagccttacgcgagcattttggcttgcctggcttt
cgtagtggtcagcaacaagtaatcgaacgggtaatggctggccgatcaactctggctttg
atgccgactggcgctggtaaatcgttgtgctaccaattgcctgcattgctgctgcctcac
gccacgatcgtgatctcgccgctgattgccttgatgaaagatcagcttgatggcttgcct
gaggcggtgcgcgaacgagcaacctttatcaacagcgcaattcccttcgatgaagttcgc
acacgcttgcgcggtttgagcgagggtcgctataaattggtgtatgttgcgcccgaacgt
ttgcgccaacgccaatttctttatgccttgcaacaagttggcatttcgttgtttgtggtc
gatgaagcccattgtgtttcgttgtggggtttctcgtttcgccccgattatctgtttatt
cgcgaagcgctgcgcgagcttggcaatccgttggtgttgggcttgacggcaactgctagc
ccagccaccgaaaaagctatctgcgagcaacttggcgatttagaaactgtgcgaaccaac
gtatttcggccaaatttacatttcgagttgatcaaagcctcgaataaagagaaaaaacaa
gcggcgattcttagtttgtgcagccaaattgatggggcaattattgtctatgcccgttcg
cgcaatagttgtgaagaattggccgagcagctgcgcaaaactggcgttgtggccgaagcc
tatcatgctggctgccccgaccgtgatgccattcaagatcgctttatgcgtggcgaaact
cgcgtgattgtcgcgaccatcgcttttggcatgggtgttgataagcgtgatgtgcgggcg
gtgattcacgccaatttgcccaaatcgctagaagattatgcccaagaggccggacgagca
ggccgcgatggccaaatttcgcgctgcattatgctctacaactttttcgataaacgccaa
ctcaaggaatggctcgaaagcagccatttcggagtcgaagaattacgcgaactctacaag
gcagttttggggcaaatcggcaaaggccaaggcacaatcaatcaagctcagctgatggag
ctttcgggctttgatgaaacccgtttgcgcgtgggcttgggtattttggagcatgttggg
ctggtgcgtcgccatttcgatctgccgcgagtttgcaaattacgtcgtggcgaagctcca
gctacacccgaaatcaaccaactttgcgagtggtttagcttggggcgttggtggcaagat
gtgagcagcctcgatttagccgctgcactgcggattgcccctagccagcttgagccaacc
ttgctcgcttggcaagaacaaggcttgctgggctacgaaggcgtggcgcgggaagtcttg
ctcgaagttttgccctcacccaaagatacgcgcgaacgcatgtatcaagttttgaagcaa
tggcgcagcacccaagaacgccaactcgattcattaacccaatatgttgaggccagccat
tgccgccatcgaattttggcggcgcagtttggtcaacgtctgcctgcttgtggcaatgcc
tgtgatatttgccaatcaggccgcatcaccatcagccgaccaccaaatgttttgcagccc
caaaccatgccgctggttggctccaattggggcaatggcggggcgatcagcgaccatcaa
cgaattatggttgaggcggtgcgcgaacatccccaacaattaaccagtcgcgatttggcg
catattttggctggctcacgcggttatagttcgcatccgttgtttggggcactcgccgaa
cgctcgtttgactcgattcgcgccgagattgatgtgttggtcgatgcagggacgttggct
tatcaaggcgcaaccttggtggcagtcgtggcagcgcccaaacgcacaggcaatcaacaa
cgtgatatcgcgttgcaagtgttagcgacgctgactcgtttgccctatcccttggggcga
actggcttggtgcgcttgctcaaaggggtcagcgatgccaaacgttcgccggatcatggc
gttttagcccatgccacgatggagcaaattgaggtggtggttgaggcgttggttgaggct
cagttgttggatcgccagcagcagggcttatatccgttgttggccttgaatagtgcaggc
cgtgcggttttgaatgatcctcagagcttgccagtgctcaacattcagggcaaacgtgat
tcggccaaagatgagcagcttcaggctgatggcgaattgttgctcttgctcaaaagctgg
cgctccgagcaggcccgcaaactcaatctaccgcactatatgattattccagatagcgtg
ttatttgatttggcggcctatcaaccaaccaatacccaagaattaagcacaatcaaaggc
attggcagccaaaaattagcccagtggggtgcagatttgctgagtttaattacaactggc
aagccgacaaactag
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