Herpetosiphon aurantiacus: Haur_4969
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Entry
Haur_4969 CDS
T00614
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hau
Herpetosiphon aurantiacus
Pathway
hau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Haur_4969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hau03019
]
Haur_4969
03009 Ribosome biogenesis [BR:
hau03009
]
Haur_4969
Enzymes [BR:
hau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Haur_4969
Messenger RNA biogenesis [BR:
hau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Haur_4969
Ribosome biogenesis [BR:
hau03009
]
Prokaryotic type
rRNA helicases
Haur_4969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABX07599
UniProt:
A9B466
LinkDB
All DBs
Position
6304890..6306644
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AA seq
584 aa
AA seq
DB search
MTTFTELGLGEATLRAITELGYEEPTPIQAQSIGLMLSGNDIIAQAQTGTGKTAAFSLPT
IERIDPKAMGVQALILTPTRELAVQVSDAISAYGKYLNIRALPVYGGQPIDRQLRALKRG
VNIVIGTPGRLMDHMERGTLDLSTVRTVVLDEADEMLNMGFVDDIEYILERAPKDRQTAL
YSATMPDEIARLARKYLRSPQMVTIEREQLTVPQIRQVYYEIGARDKFEVLTRILDLEMP
TSAIIFCRTKAMVDELGEKLLARGYGAELLHGDLSQAMRDRVMKRFREEQVEILVATDVA
ARGLDIEHVSHVINYDIPLDPEAYVHRIGRTGRAGRSGVAVTLVTPRERRQLRTIERMTG
APIQRLRLPTIADVVARRREAFKDNLRELIEQHNEQGGLEQYLVLAEELAEQYSPTDLAA
AAFKMMLGEPDLTAEDPLEMVEDEATFDARRGDRRDSRDNGRRGDRRDNGRAGERPGERG
GDRAARGPRSGGDRNNGGRSFREEGMTRLFVDIGREQGVRPADIVGAIANESGLPGRAIG
AIDIFDNFTFVDVPDEAANRVLAALGRTQIRGVKITPTLARPRR
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgactacgtttacggaacttgggctaggcgaagcgacgttgcgggcaattactgaactt
ggctatgaagaaccaactccaatccaagcccaaagtattggtttgatgcttagtggcaat
gatattattgcccaagctcaaacaggtaccggcaaaaccgctgctttttcgttgccaacg
atcgaacggattgatcccaaagccatgggtgtgcaagccttgatcttgaccccaacgcgc
gaattagccgtccaagtctcggatgctatttcagcgtatggcaaatatttgaatattcgc
gccttgccagtctatggtggtcaaccaattgatcgccaacttcgcgctttgaagcgtggg
gtcaatattgtcatcggcacacctggccgtttgatggaccacatggaacgtggcacgctt
gatctttcgaccgtgcgcactgtggtgctcgacgaagccgacgaaatgctcaacatgggc
tttgttgatgatattgaatatattttggaacgcgctcccaaagatcgccaaaccgcttta
tattcagccaccatgcccgatgaaattgcgcgtttggctcgcaaatacttgcgctcaccc
caaatggtgacgatcgaacgcgaacaattgactgtaccgcaaattcgccaagtctattat
gaaattggcgcacgcgataaatttgaagtgctcacgcggattcttgaccttgaaatgcca
acctcggcgattattttctgccgaaccaaggccatggtcgatgagcttggtgaaaaattg
ttggctcgtggttatggcgctgaattgctgcacggcgatttaagccaagctatgcgcgac
cgcgtgatgaagcgcttccgcgaagaacaagtggaaattttggtcgcaaccgacgttgct
gcccgtggtttggatattgaacatgtcagccacgtgatcaactatgatattccgcttgat
ccagaagcctatgttcaccggattggccgaactggccgagctggccgttcaggtgttgct
gtaaccttggtaacgccacgcgaacgccgccaactgcgcacgatcgaacgtatgactggt
gctccaattcaacgcttacgcttgccaacgattgccgatgtggttgcccgccgccgcgaa
gcattcaaagataacttgcgtgaattgatcgagcaacacaacgaacagggtggtttggag
caatatttggtcttggctgaagaattggccgaacaatattcaccaaccgatttggccgct
gctgccttcaagatgatgcttggtgagccagatttgaccgccgaagatcctttagaaatg
gttgaagacgaagccaccttcgatgctcgccgtggtgatcgccgcgatagccgcgataat
ggtcgccgtggcgatcgccgcgacaatggtcgcgctggtgagcgacctggtgagcgcggt
ggcgatcgggctgcccgtgggcctcgtagcggtggcgatcgcaacaacggtggccgctcg
ttccgcgaagaaggcatgacccgcttgtttgtagacattggccgcgaacagggtgtgcgc
ccagctgatattgttggcgcaattgccaacgaatcaggcttgccaggccgtgcaatcggc
gcaatcgacattttcgataacttcacctttgttgatgtgccagatgaggctgcgaaccgc
gtgttggctgcccttggtcggacccaaattcgcggtgtgaaaatcaccccaaccttggcc
cgcccacgtcgctaa
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