Hafnia alvei: AT03_01685
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Entry
AT03_01685 CDS
T03425
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
hav
Hafnia alvei
Pathway
hav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT03_01685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_01685
Enzymes [BR:
hav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT03_01685
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT03_01685
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIU71232
UniProt:
A0A097QXS3
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All DBs
Position
complement(350053..351342)
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AA seq
429 aa
AA seq
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MSKTHLTEQKFADFALHPTVVKALESKGFHNCTPIQALALPLTVNGRDVAGQAQTGTGKT
LAFLASTFHYLLTHPAAENRKTNQPRALIMAPTRELAVQIHSDAEALAHETGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQGHIDLACIQVVVLDEADRMFDLGFIKDIR
WLFRRMPATNQRLNMMFSATLSYRVRELAFEHMNNAEYIEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRCIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGNLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRAGESGYSITLA
CEEYVLNLPAIETYIEHSIPVSKYNSDALLTDLPAPKRLTRPRSNNGQRRSSGPRRNNGS
MRQSRKRTS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttcgccgacttcgccctgcaccctacggtg
gtcaaagcccttgaatctaaaggctttcataactgcacgcctattcaggcactcgcatta
cccctgacagtgaacgggcgtgatgttgcaggtcaggcgcaaacaggcaccggtaagacg
ctggcttttttagcgtcaactttccattatttacttactcaccctgccgcagagaaccgt
aaaaccaatcagccaagagcgctgattatggctccgacacgtgagttagccgttcaaatc
cactccgatgctgaagctttagcgcatgaaactggcctcaaattaggcttagcttacggc
ggtgacggctatgacaaacagcttaaagtgctcgaaagcggcgttgatattctgatcggc
accaccggtcgtcttatcgactatgcgaaacagggccatatcgacctagcctgtattcag
gttgtggttcttgatgaagctgaccgtatgttcgatctaggctttatcaaagatatccgc
tggctattccgtcgcatgcctgcgactaatcagcgccttaatatgatgttctctgccacg
ctgtcataccgcgtgcgtgagctggctttcgagcacatgaacaacgccgaatatattgaa
gtcgagccagaacaaaaaacgggtcaccgtattaaagaagagctgttctatccttctaat
gaagaaaaaatgcgtttgctgcaaacgctaatagaagaagagtggccagatcgctgcatt
attttcgccaataccaaacaccgctgtgaagacatctggggccacttagccgcagacgga
catcgcgttggtttgctgaccggtgatgtagcgcagaaaaaacgcctgcgtattcttgat
gatttcaccaaaggcaatctggatattctggttgcgaccgacgttgcggcacgtgggtta
catattccactggttacacacgtctttaactacgatttacctgatgactgcgaagactac
gttcaccgcattggccgtacaggccgcgctggcgaaagcggttattccatcacgctagcg
tgtgaagaatatgtattaaatttaccggcaattgaaacctacattgagcattcaattcca
gtaagtaagtacaacagcgatgcattgctaactgatttacctgcgccgaagcgattaact
cgccctcggagtaacaacggccaacgccgtagctcaggcccgcgccgtaacaacggttcg
atgcgtcaaagccgtaaacgtacgagttaa
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