Hafnia alvei: AT03_03510
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Entry
AT03_03510 CDS
T03425
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hav
Hafnia alvei
Pathway
hav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT03_03510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_03510
03016 Transfer RNA biogenesis [BR:
hav03016
]
AT03_03510
Enzymes [BR:
hav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AT03_03510
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AT03_03510
Transfer RNA biogenesis [BR:
hav03016
]
Prokaryotic type
tRNA degradation factors
AT03_03510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
S1_2
KH_2
S1_RRP5
aRib
UPF0181
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AIU71550
UniProt:
A0A097QYJ8
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All DBs
Position
745690..747804
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AA seq
704 aa
AA seq
DB search
MLNPIVRKFQYGQNTVTLETGMMARQATAAVMVTMDDTAVFVTVVGAKKAKEGQSFFPLT
VNYQERTYAAGRFPGGFFRREGRPGEGETLIARLIDRPVRPLFPEGFLNEVQVVATVVSV
NPQVSPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELQESKLDLVVA
GTEGAVLMVESEAQLLSEDQMLGAVVFGHDQQQVVIENIKALVAEAGKPRWEWTAPAVNE
ALHARVAALAETRIGDAYHITEKQARYAQVDQIKTDVIAALQAEDESLSAGEIADVLGSL
EKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTER
DAQNIDGLTGEQTDRFLLHYNFPPYSVGETGMMGSPKRREIGHGRLAKRGVLAVMPKQDE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEDENFVVLSD
ILGDEDHLGDMDFKVAGSREGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQA
INAPRGDISEFAPRIHTIKINPEKIKDVIGKGGSVIRALTDETGTTIEIEDDGTIKIAAT
DNEKAKHAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQDVPVKVLEVDRQGRVRLSIKEASAPEQAAAPAAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaatcctatcgttcgcaaattccaatacggtcagaataccgtaacgctggaaact
ggcatgatggctcgccaagccactgctgctgtaatggttaccatggatgataccgcggta
ttcgttaccgttgttggtgcgaaaaaagctaaagaaggccagagcttcttccctctgacc
gttaactatcaggagcgtacttacgctgctggtcgtttcccaggtggtttcttccgtcgt
gaaggccgtcctggtgaaggcgaaactctgattgcgcgtctgattgaccgcccagttcgc
ccactgttcccagaaggcttcctgaatgaagttcaggtagttgctaccgttgtttctgta
aacccgcaggttagcccagacatcgttgcgatgatcggtgcttctgctgccctgagcctg
tctggtattccattcaatggcccaatcggtgcagcccgcgttggttacatcaacgaccag
tatgtgctgaacccaacaacagatgagctgcaagaaagcaagctggatctggttgttgcc
ggtaccgaaggcgcagtactgatggttgaatctgaagctcaactgctgagcgaagaccag
atgctgggtgccgttgtattcggtcacgatcagcagcaggttgttattgaaaacatcaag
gcgctggttgctgaagctggtaaaccacgttgggaatggactgctccggctgttaacgaa
gcgctgcacgcgcgcgttgctgctctggctgaaacccgtatcggcgatgcataccacatc
actgaaaaacaggctcgttacgctcaggttgatcaaatcaaaactgacgttatcgctgct
ctgcaggctgaagacgaatctctgagcgctggcgaaatcgctgatgttctgggttcactg
gaaaaaaatgtcgtacgtagccgtgtgctgcgtggcgagccacgtatcgatggccgtgaa
aaagacatgatccgtggtctggacgttcgcactggcgtactgcctcgcacccatggttcc
gcactgttcactcgtggtgaaactcaggctctggttaccgcaactctgggtacagaacgt
gatgctcagaacattgatggcctgaccggcgagcagactgaccgcttcctgctacactat
aacttccctccgtactccgtaggggaaactggcatgatgggctcacctaagcgtcgtgaa
attggtcacggtcgtttggcgaagcgcggcgtgctggcagtaatgcctaagcaagacgaa
ttcccgtacaccgttcgtgtggtttcagaaatcaccgaatctaacggttcttcttctatg
gcttctgtttgcggtgcttcactggcactgatggacgcaggtgtaccgatcaaagctgcc
gttgctggtatcgctatgggtctggttaaagaagatgaaaacttcgtcgttctgtctgat
attctgggtgacgaagatcatctgggcgacatggacttcaaagttgcaggtagccgtgaa
ggtatcactgcactgcagatggatattaaaatcgaaggcatcacccgcgaaatcatgcag
gtggctctgaatcaggctaaaggtgcacgtctgcacattctgggtgtaatggaacaggcg
attaacgcgccgcgtggcgatatctctgaattcgctccacgtatccataccatcaagatc
aatcctgagaagatcaaagatgtcatcggtaaaggtggttctgtaattcgtgcactgact
gacgaaactggaacgactatcgaaatcgaagacgatggcacgattaaaattgcagcaacc
gacaacgaaaaagcaaaacatgctattcgtcgcatcgaagaaattactgctgaaatcgaa
gttggccgcatctatcagggtaaagtaacccgtatcgttgatttcggtgcattcgttgct
atcggtggcggtaaagaaggtctggtacatatttctcagatcgctgataagcgtgttgag
aaagtgaccgactatctgcagatgggtcaggatgttcctgttaaggtactggaagttgac
cgtcagggtcgcgtccgcctgagcatcaaagaagcaagcgcgccagaacaggccgctgct
ccagctgctgaataa
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