Hafnia alvei: AT03_03520
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Entry
AT03_03520 CDS
T03425
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hav
Hafnia alvei
Pathway
hav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT03_03520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_03520
03009 Ribosome biogenesis [BR:
hav03009
]
AT03_03520
Enzymes [BR:
hav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT03_03520
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT03_03520
Ribosome biogenesis [BR:
hav03009
]
Prokaryotic type
rRNA helicases
AT03_03520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
UTP25_NTPase-like
LisH_WDR26
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AIU71552
UniProt:
A0A097QYN1
LinkDB
All DBs
Position
748986..750920
Genome browser
AA seq
644 aa
AA seq
DB search
MAEFETSFADLGLAAPIIQALTDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAF
SLPLLHNIDPSLKAPQVLVLAPTRELAVQVSEAMADFAKHMNGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAQ
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSITTRPDISQSYWTVFGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVDRISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERIMKLTIPEVEIPNAELLGQRRLAKFAAKVQQQLESSDLDKYRDLLTKLQPEDELDMET
LAAALLKMAQGERPLILPPDPVMERRPRREFRDRDDRNERGGDRFARRGDREPREAREGA
APRRERREAGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELP
KGMPGDLLSHFTRTRILNKPLNMQLMGDAPAREPRRERPAGDRGGRNFGGGREGGERRNF
GGRDGAPRRDDRRGNSDRSAAPRGPRRDDAAQPPRRRTPTSNDA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggctgagttcgaaacttcttttgctgacctagggttagctgcaccaattatccaagcc
ctgaccgatctgggctacgaaaaaccgtctcctatccaggcggaatgtattcctcacctt
ttaaatggccgtgacgttctgggtatggctcagaccggttccggtaaaacagcggcgttc
tctttaccgctgctgcacaatattgatccaagcctgaaagcaccacaggtgctggttctg
gctccaactcgtgagctggcagttcaggtttctgaagcgatggctgacttcgctaaacac
atgaacggcgtaaacgttgttgctctgtacggtggccaacgctacgacgtacagctgcgc
gctctgcgtcaggggccacaaattgttgtgggtactcctggtcgtctgcttgaccacctg
aaacgtggcaccctgaacctgtctaacctgagcggtttggttctggacgaagcggatgaa
atgttgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccagcacag
caccaaacggcgctgttctctgcaactatgccagaagctattcgtcgtattacccgtcgc
ttcatgaaagagccacaggaagtacgcattcagtcaagcatcactacacgtccagacatc
agccagagctactggactgtgttcggtatgcgtaaaaacgaagcgctggttcgtttcctt
gaagctgaagattttgatgctgcaatcatcttcgtacgtaccaaaaatgccactctggaa
gttgcagaagcgttggaacgtagcggttacagcagtgctgcattgaacggcgatatgaat
caggctctgcgtgagcagactttggagcgtctgaaagacggtcgtttggatatcctgatt
gcaactgacgttgctgcacgtggtctggacgttgaccgtatcagtctggttgttaactat
gacatcccgatggactctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcaggc
cgtgcaggtcgcgcattgctgttcgttgagaaccgcgaacgtcgtctgctgcgcaacatc
gaacgcatcatgaagctgactattccagaagttgaaatcccgaatgcagaattgctgggt
caacgtcgtctggctaagtttgccgctaaagttcagcagcagctggaaagcagcgatctg
gacaaataccgcgatctgctgactaaactgcagccggaagatgagctggatatggaaact
ctggccgcagcattgctgaaaatggcacagggcgaacgtccactgatcctgccaccagat
ccagtaatggaacgtcgtccacgtcgcgaattccgtgaccgtgacgatcgtaacgaacgc
ggcggtgaccgtttcgctcgtcgtggcgaccgtgagccacgtgaagcacgcgaaggcgct
gctccacgtcgtgaacgtcgtgaagccggcgatatggaactgtatcgtattgaagttggc
cgtgatgatggtgttgaagttcgtcatatcgttggcgctatcgctaacgaaggtgatatc
agcagccgttacattggtaacatcaagctgtttgcttctcactcaaccatcgagctgcct
aaaggtatgccaggtgatctgctgtctcatttcacccgtacccgtatcctcaacaagccg
ctgaacatgcagctgatgggtgatgctccggcacgcgaaccacgtcgtgaacgcccagca
ggcgatcgcggtggccgtaacttcggtggtggtcgtgaaggtggtgagcgtcgtaacttc
ggtggacgtgatggcgcacctcgccgtgatgaccgtcgtggtaacagcgatcgtagcgca
gcaccacgcggcccacgtcgtgatgatgcagcacagccgccacgtcgtcgtactccgact
agcaacgacgcataa
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