Hafnia alvei: AT03_10270
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Entry
AT03_10270 CDS
T03425
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
hav
Hafnia alvei
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hav03016
]
AT03_10270
Enzymes [BR:
hav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AT03_10270
Transfer RNA biogenesis [BR:
hav03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AT03_10270
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
Motif
Other DBs
NCBI-ProteinID:
AIU72727
UniProt:
A0A097R1X2
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All DBs
Position
complement(2234063..2236003)
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AA seq
646 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGVVKGTDKGFGFLEVDAQKSYFIPPPYMKKVMHGDRV
LAAVHTEKDREVVEPEELVEPFLTRFVGRVQKKDGDNRLSIIPDHPLLKDAIPCRADNNV
THEFKQGDWAVAEMNRHPLKGDRTFFANITTFITDADDDFAPWWVTLSRHGLDRTAPEWS
GSEMHEEGLEREDLTALPFVTIDSASTEDMDDALYVQENEDGSLALTIAIADPTAYVEPD
SELDKIARVRAFTTYLPGFNIPMLPRDLSDDLCSLRPNERRPALLCRVTIQKDGAISDDI
RFFAGWIESKAKLVYDEVSDYLEGVGSWKPENAQIEQQVRLLHRLADSRSEWRQHHALVF
KDRPDYRFVLGEKGSVVDIIAEHRRVANRIVEECMITANVCAAIVLRDRLGFGVYNIHSG
FDPALVEQAVSILQANDVFANAETLLTLQGFCELRRHLDSLPTTFLDSRVRRFQTFAEIS
TEPGPHYGLGLEAYATWTSPIRKYGDMVNHRLLKALIANKPADRPDEAITVQMADRRRLN
RMAERDVGDWLYARFLKDKVAPEIHFNAEIVDISRGGMRVRLVDNGAMAFIPSSFIHAVR
DELVCSQETGSIQIKGETVYQTGDALQVYLVEVRLETRSIIAKPVA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggataacccgctgctcgcgcagctaaaacagcaactgcactcccagactcca
cgcgttgaaggcgtggttaaagggaccgacaaaggttttggcttcttggaagttgacgcc
cagaaaagctatttcatcccgccaccgtacatgaaaaaagtcatgcatggtgaccgcgtt
ctggctgctgttcacactgagaaagatcgtgaagtcgttgagccggaagagctggttgag
cctttcctaacaagattcgttggtcgggtacagaaaaaagacggtgataaccgcctttcc
attatccctgaccatccattgctgaaagatgccatcccatgcagagcggacaacaacgta
acgcatgaatttaagcaaggcgactgggccgttgctgaaatgaatcggcatccgctgaaa
ggcgaccgtactttctttgccaatatcaccacgtttattaccgacgcggatgatgatttt
gcaccgtggtgggtcaccctttctcgtcacggactggatcgcacggcaccagaatggtct
ggtagcgaaatgcatgaagaaggcttggagcgtgaagacctcaccgctttgccattcgtc
accatcgatagcgccagcaccgaagatatggatgatgcgttgtatgtgcaggagaacgaa
gacggttctttggcattaaccatcgccattgccgatccaacggcctacgttgagccagac
tccgagctggataaaattgctcgggtgcgtgctttcaccacttatttgcctggtttcaac
attccgatgttgccgcgcgatttgtctgacgatctgtgttcactgcgccctaacgaacgc
cgtccggcgctgctgtgccgcgttaccatacagaaagacggcgctatttctgacgatatt
cgcttctttgcgggctggattgaatccaaagccaagctggtttatgacgaagtttcagac
tatctggaaggcgttggcagctggaaaccggaaaatgcccaaatcgaacagcaggttcgc
ctgttgcatcgtttagccgattcccgttctgagtggcgtcagcaccacgccttggtgttt
aaagatcgcccagattatcgctttgttttaggcgaaaaaggcagcgtagttgatatcatt
gccgagcatcgccgtgtggcaaaccgtatcgtggaagagtgcatgatcactgctaacgtc
tgcgccgctatcgtgctgcgtgaccgtttaggcttcggtgtttataacatccactccggt
ttcgatccggcgctggttgaacaggccgtgagcattctgcaagccaacgatgtatttgcc
aatgcagaaacattattaaccttgcagggcttctgcgaactccgtcgtcacttagattcg
ttgccaacgacgttccttgatagccgcgtgcgccgtttccagacctttgctgaaatcagc
accgagccgggcccgcattacggtttaggcttagaggcctacgcaacgtggacttcaccg
atccgtaaatacggtgacatggtgaatcatcgtctgctgaaagcgctgattgcgaataaa
cccgccgaccgcccagatgaagccattaccgttcagatggcagatcgccgccgcctgaat
cgtatggcagagcgtgatgttggtgattggttatatgctcgcttcctgaaagataaagtg
gctccagagattcactttaacgcggaaatcgttgatatttcgcgtggcggtatgcgcgtg
cgtttggttgataacggtgcgatggcgtttattccgtcctcgtttattcacgccgtgcgt
gatgaactggtatgtagccaagaaacgggctccattcagatcaaaggcgaaaccgtttat
cagacgggcgatgccctacaggtttatctggttgaagtgcgcctagaaacgcgcagtatt
attgccaaacctgtcgcttaa
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