Hafnia alvei: AT03_11995
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Entry
AT03_11995 CDS
T03425
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hav
Hafnia alvei
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hav03032
]
AT03_11995
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_11995
Enzymes [BR:
hav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
AT03_11995
DNA replication proteins [BR:
hav03032
]
Prokaryotic type
DNA Topoisomerases
AT03_11995
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
AT03_11995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AIU73037
UniProt:
A0A097R2T1
LinkDB
All DBs
Position
complement(2597847..2600444)
Genome browser
AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSASKKGAASAEDKAKPKVK
KNEREALVNRMGVDPYHGWKAQYEILPGKEKVVAELKTLAEKADHIYLATDLDREGEAIA
WHLREVIGGDESRYSRVVFNEITKNAIQQAFNKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVDREREIKAFVPEEYWELRADLNDKNAVALQMQVTH
HKDKPFKPVNGDQTQTAVKALENAHYTVLDREDKPTSSKPSAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVSMVREYIGENFGEQYMPKEPNTYASKDN
SQEAHEAIRPSDVNVLSEQLKDMEADAQKLYQLIWRQFVSCQMTPAKYDSTTISVKAGDY
TLKAKGRTLRFDGWTKVLPQLRKGDEDRTLPFVEIGSELTLQQLLPSQHFTKPPARFSEA
SLVKELEKRGIGRPSTYAAIISTIQDRGYVRVDNRRFYAEKMGEIVTDRLEENFRELMNY
DFTAHMENGLDQVANAKEDWKNVLDGFFQDFSKQLSVAEKDPEEGGMRPNQMVLTSIACP
TCERQMGIRTASTGVFLGCSGYALPPKERCKTTINLVPEAEVLNVLEGDDAETNALRAKR
RCAKCGTAMDSYLIDNQRKLHVCGNNPACDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRNGDVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELARFKDRLPEKLSYLADAPQKDPEGNKTMVRFSRKTKQQYV
SSEKDGKATGWTAFFVDGKWVETKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctctcgtaatagttgagtccccggcaaaagctaaaacgataaataagtat
ctgggtaatgactacgtggttaagtccagcgtcggtcatatccgcgatttgccgaccagt
ggttcagccagtaaaaagggcgcagcctccgctgaagataaagcgaagcctaaagtcaaa
aagaatgagcgtgaagcgctggttaatcgtatgggcgttgatccttatcacggctggaaa
gcgcaatacgaaatactccccggtaaagaaaaagttgttgctgagttaaaaacattagct
gaaaaagctgaccacatttatctcgcaaccgaccttgaccgcgaaggggaagccatcgcg
tggcatttacgtgaggtgattggcggcgacgaaagtcgttatagccgcgtggtgtttaac
gaaatcactaagaacgcgattcagcaggcatttaataaacccggcgaattaaatatcgac
cgtgttaacgcacagcaggcgcgccgttttatggaccgcgttgtgggctacatggtttct
ccgctgctgtggaaaaaaattgcccgtgggctatctgccggtcgtgttcagtcggttgct
gtacgtttggttgtcgatcgtgaacgtgagatcaaagcgtttgttcctgaagaatattgg
gaactgcgtgccgatctgaacgacaagaatgccgttgctctgcaaatgcaggttacgcat
cacaaagacaaaccgttcaaaccggttaatggcgatcaaactcagaccgccgttaaggcg
ctggagaatgcgcattacacggttttagatcgtgaagataagccaaccagcagcaagcct
tctgcgccgtttattacttccacgttgcagcaggcggcaagcacgcgtcttggctttggc
gtgaagaaaaccatgatgatggctcagcgtctgtatgaagccggtcatatcacctatatg
cgtactgactccactaacctgagtcaggatgcggtgagcatggtgcgtgagtatatcggt
gaaaacttcggcgagcagtacatgccgaaagagccaaatacctacgcgagcaaagacaac
tcgcaggaagcgcatgaagcgattcgtccttctgatgtgaacgtgttgtctgaacaatta
aaagacatggaagcagacgctcagaagctgtatcagctgatctggcgccagtttgtttct
tgtcagatgacaccggcaaaatacgattcaaccacgatttccgtgaaagcgggtgattat
acgttgaaagcaaaaggccgcactttacgctttgatggttggactaaagttctgcctcag
ctgcgtaaaggcgacgaagatcgcactttgccatttgtcgaaattggtagtgaattgacg
ttgcagcagctcttacctagccaacacttcaccaaaccaccggctcgctttagcgaggca
tcgttggtgaaagagttggagaaacggggcatcggtcgtccttctacctatgcggcaatc
atttcaaccattcaggatcgtggctatgtgcgtgtggacaaccgccgtttctacgctgaa
aaaatgggtgagattgtcactgatcgcttggaagaaaatttccgtgagctgatgaattat
gacttcaccgcgcacatggaaaacgggcttgatcaggtagcgaatgccaaagaagactgg
aaaaacgtgcttgatggtttcttccaagacttcagcaaacagctttcagtcgctgaaaaa
gatccagaagaaggcggtatgcgtccgaaccaaatggttctgaccagcattgcttgccca
acctgtgaacgtcagatgggaattcgtaccgcaagcaccggcgttttcttgggttgttct
ggctatgcgctaccgccgaaagagcgttgcaaaaccacgatcaatctggtgccagaagcc
gaagtgctgaacgtgctggaaggcgatgatgctgaaaccaacgcattgcgcgctaagcgc
cgttgtgccaagtgcggcacggcgatggacagttatctgatcgacaatcagcgcaagctg
cacgtgtgtggtaacaacccagcgtgtgacggctacgagatcgaagagggtgagttccgc
atcaagggctacgatggcccgatcgttgagtgcgaaaaatgtggttctgaaatgcacttg
aaaatggggcgtttcggtaagtacatggcatgtaccaacgaagagtgcaagaacacccgt
aagatcctgcgtaacggcgacgtagcaccaccgaaagaagatccggtgccgctgcctgaa
ttgccgtgtgaaaagtcagacgcttacttcgtgctgcgtgatggcgctgcgggtgtgttc
ttggcggcgaataccttccctaaatcgcgtgagacgcgtgcacctctggtggaagagtta
gctcgtttcaaagatcgcttacctgaaaagttgagctatctggccgatgcaccgcagaaa
gaccctgaaggtaacaagacgatggtgcgtttcagtcgtaagactaaacagcaatatgtc
tcttcagaaaaagacggcaaagcgacaggttggaccgcattcttcgttgacggaaaatgg
gttgaaactaagaaataa
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