Hafnia alvei: AT03_12995
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Entry
AT03_12995 CDS
T03425
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hav
Hafnia alvei
Pathway
hav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT03_12995 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_12995 (rne)
03009 Ribosome biogenesis [BR:
hav03009
]
AT03_12995 (rne)
Enzymes [BR:
hav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AT03_12995 (rne)
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AT03_12995 (rne)
Ribosome biogenesis [BR:
hav03009
]
Prokaryotic type
rRNA processing factors
AT03_12995 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
AIU73217
UniProt:
A0A097R3A2
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All DBs
Position
2800739..2804155
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AA seq
1138 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPNNYSSHGRPNIKDVLREGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLQLPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWDAIKKAAEGRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKILDLA
KQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLRDAVRQDRARIQIGRISRFGLLEMSRQRLSPSLGESSHHVCPRCNGTGTVRDNESLS
LSILRLIEEEALKENTNEVHAIVPVPVASYLLNEKRESVSAIEKRQDGVKVIVVPNDQMQ
TPHYNVVRVRKGEETSTLSYLLPQLHEAETLTAEEEPVLERKRPEQPALAAFSLDVEAPP
AETAAPVVAAPAAKTAAQPAAPAQPGLISRFFSALKNMFAGSEPEQQPVVEVSAPAEEPR
RQNQDRRNNNRRQQNGRRDRNDRSDRNNDRNERNNDRNDRGERTERSNERNNDRNSNRED
QRRNRRQSTQPANADVNVETANVEQRDEQQPRREPRNNDRQRRRTEDKRQAQQEVKALEN
NDAAVANEAEENSREENQHMPRRQRRQLTQKVRFTTQAEDDAAAALAKASVPAVVTAPVV
AETAPQAEPAQQQNNDDEGFRDNRQGENGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQS
PMPLAFAAASPEMASGKVWISYPVAQQAISEVEVETQPIAIEQPIEQAPVSPVNESVTEH
VAEQPVIVEESVAEPVVDVEPVVESNVVEPAVSAPVVEKPVASAPVVATSAAAVPAAFDA
IVPAQAINDEPATVEETAPVVEESVADDKPVVVEAAVVEETISEAPVVTETTVAETVVEE
NAAEETHAKPTTIDATAAETPVVEETTVEETVAQVVVEEPVVQPVVAAKPVIVVAAKAQR
VASAPMTKAPAPEYVPSAPVVSNWQRPTLDLQSKGGAGGHAAVSQATAPATKPPAVTD
NT seq
3417 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
ggacagcgtctgtatgatctggatattgaaagccctggtcacgaacagaaaaaagctaac
atttacaaagggaaaataacccgtattgagccaagtctggaagctgcttttgtagattac
ggtgctgaacgacatggttttctccccctcaaagaaattgcccgcgaatatttcccaaac
aattactcctcacatggccgtccaaacatcaaagatgttttacgcgaaggtcaggaagtt
attgttcaggttgacaaagaagagcgtggcaacaaaggcgcagcactgaccacgtttatc
agccttgctggtagctacttagtactgatgcctaataacccacgcgctggcgggatctct
cgtcgcatcgaaggtgatgaccgcactgaattgaaagaagccctttcttctctgcagtta
cccgacggcatgggccttatcgttcgtaccgcaggcgttggcaaatcagccgaagcgctg
caatgggatctgtcattccgtttgaaacattgggatgccattaaaaaagccgctgaaggc
cgccctgctccgttccttatccatcaggaaagcaacgttattgttcgcgcattccgcgac
tacctgcgcccagacattggcgaaatcctgattgataatccaaaaattctcgatctggcc
aaacagcatatcgccgcgctgggacgtcctgatttcagcagcaagattaaactctatacc
ggtgaaatcccgctgtttagccactaccaaatcgaatctcagattgagtcagcgttccaa
cgtgaagttcgcctgccttccggcggctccattgttattgactccactgaagccctgaca
gctatcgacatcaactccgcacgcgctacacgcggtggtgacatcgaagaaaccgcattc
aacaccaaccttgaagccgctgatgaaattgctcgccagctgcgtctgcgtgaccttggt
ggcctgattgttatcgacttcatcgatatgacgccagttcgtcatcagcgcgaagttgaa
aaccgtctgcgtgatgccgttcgccaagaccgtgcgcgtattcagattgggcgcatatct
cgctttggtctgcttgaaatgtctcgccaacgcctcagcccatcactgggtgagtcaagc
caccacgtttgcccgcgctgtaacggcaccggcaccgtacgtgataacgagtcactttca
ctctctatcctgcgtttgattgaagaagaagcgctgaaagagaacaccaatgaagttcac
gctatcgttcctgtgccggttgcctcttacctgctgaacgaaaaacgtgaatctgttagc
gccatcgaaaaacgtcaggacggcgttaaagttatcgttgtgcctaacgaccagatgcaa
actccgcactacaacgtagttcgtgtgcgcaaaggtgaagagaccagcaccctaagctat
ttgctgcctcagctgcatgaagcggaaacgctgaccgccgaggaagagccggttctggaa
cgtaaacgtccagaacagccagcgttagcagctttctcactggatgttgaagcgcctcca
gctgaaacagcggctccagtcgttgcagcgcctgcggcgaaaaccgcagcacagccagca
gcgcccgcgcagccaggcttgattagccgtttcttctctgcactgaaaaatatgtttgca
ggttctgaacctgagcaacaaccagtcgtagaagtttcagcgcctgctgaagaacctcgc
cgtcagaatcaagaccgtcgtaacaacaaccgccgtcagcaaaatggtcgccgtgatcgt
aacgatcgctctgaccgtaacaacgaccgtaacgaacgcaacaacgatcgtaacgaccgc
ggtgagcgtactgaacgcagcaacgaacgtaataacgaccgcaatagcaaccgtgaagac
cagcgtcgtaaccgtcgccagtcaacacaaccggctaatgctgatgtgaacgttgaaaca
gcgaacgttgaacaacgtgatgagcagcagcctcgccgtgagccacgcaataacgatcgt
caacgtcgtcgcactgaagataagcgtcaggcccagcaagaagttaaagcgctggaaaac
aacgatgccgcagtagcgaatgaggctgaagagaacagccgcgaagagaatcagcacatg
ccgcgccgtcagcgtcgccaactgactcagaaagttcgctttacgactcaggctgaagac
gatgccgcagcagctctggctaaagcatctgttcctgccgttgtcacagcccccgtagtt
gcagaaactgcaccacaggctgaaccagcacagcagcaaaacaatgatgacgaagggttc
cgtgataaccgccaaggtgaaaacggtatgccacgtcgttcacgtcgctctcctcgccat
ctgcgtgtgagtggccaacgtcgtcgtcgttatcgtgatgagcgctatccaactcagtca
ccaatgccgctggcattcgccgcagcatcgcctgagatggcttcaggtaaagtgtggatt
agctacccagtcgcacagcaggctatctctgaggttgaagttgaaactcagccgatcgca
atcgaacaaccgattgaacaagcacctgtttcaccggttaacgaatctgtgactgagcat
gttgctgagcagcctgtcatcgttgaagaatctgttgctgaacctgtagtagatgttgag
cctgttgttgaatcaaacgttgttgagccagccgtttctgcgccagttgtcgagaaaccg
gtcgcatccgctccggtcgttgcgacctcagcggcagcagttccagctgcgtttgacgcc
atcgtgccagcacaagccatcaatgacgagcccgctactgttgaagaaacagcaccagta
gttgaagaatcggttgccgatgacaaacccgttgtcgttgaagccgcagtggttgaagaa
accatttctgaagcgcctgtcgtaacagaaactacagtggcagaaactgtcgttgaagaa
aacgcggctgaagagactcacgctaaaccaacgaccattgacgcaactgcggctgaaacg
ccagtggttgaggaaacgacagttgaagaaaccgttgctcaggtagttgttgaagagcct
gttgttcagccagtcgtagcggcgaaacctgtcattgtcgtcgcagctaaggctcagcgc
gtagcatcagcgccgatgaccaaggctccagcgccagagtatgtaccttctgcgccagtc
gtcagcaactggcagcgccctactctggatttgcagagcaaaggcggtgccggtggacat
gcggcggtaagccaagcaacggcgccagcgactaagccaccagcggttactgactaa
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