Hafnia alvei: AT03_14270
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Entry
AT03_14270 CDS
T03425
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hav
Hafnia alvei
Pathway
hav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT03_14270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_14270
Enzymes [BR:
hav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AT03_14270
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT03_14270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIU73435
UniProt:
A0A097R3Z0
LinkDB
All DBs
Position
complement(3057442..3058860)
Genome browser
AA seq
472 aa
AA seq
DB search
MSFDTLGLSAELLRAVEEQGYREPTPIQSQAIPVVLQRRDLMASAQTGTGKTAGFTLPLL
QLLSKDAQPVKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQRAVDLSNVEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKELANKLLTNPASVEVARRNTASEQVEQSVHFVDKRRKRELLAQLI
GTHNWQQVLVFTRTKYGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKAGSIRVLV
ATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAESTGEALSLVCVDEHKLLRDI
ERLLKREIPRIAIEGYEPDPSIKADPIQNGRQSQGRGQGRGQGQGRGQSQGRSQGNGQSR
DGARSGEKPRSSNNGGQRRAAGEGRKPEARGDAPSSQQRRPYRGNKKPATTA
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgatactctcggcctgagtgccgaattgttgcgcgctgttgaagaacagggc
tatcgcgaacctacgcctattcaatctcaagcgatcccggtggttttacaacgccgtgac
ctgatggccagtgcccaaaccggtaccggcaaaaccgcaggctttacgctgccgctgtta
cagctgctttctaaggatgcgcagccggtaaaaggccgtcgtcctgtgcgtgcgcttatc
ttaacgccaacgcgcgaactggctgcccagatcggcgagaacgtgcgtgattacagcaaa
tatttaaatatccgttcgctggtagttttcggcggcgtgagcattaacccgcagatgatg
aagttgcgcggtggcgttgacgttctggtggcaacgccgggtcgtttgctggacttggaa
catcaacgtgcggttgatttatccaacgttgaaattctggtactggacgaagctgaccgt
atgctggatatgggctttattcacgatatccgtcgtgtattggctaagctgccagccaag
cgccaaaacctgctgttctctgcgacgttctctgatgaaatcaaagagttggctaataag
ttactgactaatcctgcttccgttgaagtggcgcgtcgcaacacggcgtctgaacaggtt
gaacagtctgtacatttcgtggataagcgccgcaagcgcgagctactggctcagctgatt
ggcactcataactggcagcaggttctggttttcactcgtactaagtacggggctaaccat
ttggctgaacagctgaataaagatggtattaccgccgcggcgatccacggtaacaaaagt
cagggtgcgcgtactcgtgcgttggctgattttaaagccggttcgattcgcgttcttgtg
gcgacggatattgccgcgcgtggtttggatatcgatcagctaccgcacgtggttaacttt
gagctgccaaacgtgccagaagattacgtgcaccgtattggccgtactggccgtgcagaa
tctaccggcgaagcgttgtctttagtctgtgtggatgagcataagctgctgcgagatatc
gaacgtttgctgaaacgtgagatcccacgcattgcgattgaaggctatgagccggatcca
agcattaaagccgatccgattcaaaatggccgtcaaagccaaggtcgtggtcagggacgt
gggcaaggccaaggtcgcggtcagtctcagggacgcagccaaggtaatggtcagtcgcgc
gatggtgctcgctctggtgagaaaccacgcagcagcaacaacggcggccagcgccgtgcg
gcgggagaaggtcgtaaacctgaagcccgtggtgatgcgccttcgtcacagcagcgtcgt
ccgtatcgtggtaacaagaaaccagccaccacggcgtaa
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