Hafnia alvei: AT03_16025
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Entry
AT03_16025 CDS
T03425
Name
(GenBank) exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hav
Hafnia alvei
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_16025
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AT03_16025
Archaeal homologous recombinant proteins
AT03_16025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
nSTAND3
TsaE
cobW
AAA_22
AAA_25
DUF4586
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
AIU73744
UniProt:
A0A097R4U8
LinkDB
All DBs
Position
3456969..3460661
Genome browser
AA seq
1230 aa
AA seq
DB search
MKILSLRLKNINSLKGEWKIDFTREDFANNGLFAITGPTGAGKTTLLDALCLALYHQTPR
LKVSPTQNELMTRGTAESLAEVEFEVKGVGYRAFWSQRRANNKPDGNLQTPKVELAHIAD
GEIITDKIQTKLHKIADITGLDFGRFTKSMMLSQGQFAAFLNADPAERAELLEELTGTEI
YGQLSEQIFQRFKQAKIDLDTLHERAAGVELLSEEALNQLSERLSELQREEQQQTSLRQT
LMTDLQWLQKSQELSQNREQCTQRVTAASQQWQTAQPEVLRLERSEPAEKLRPLLFTLHQ
TRADLASATQSQQQREQQRQQLTSQLALLQTASSQALHAKQQHQQQRTATETLINQHVVP
LDSRLTQIREDLLAQQQKLTQLSEEKQKQETALKQNREKLHAQQQEISQLQQQLADTAQH
AEWNNHLGRWKSQFEQSAEHCQSLNELRKRIADAEKNIATETEKLTALQQAGSLLNQRIA
QQQKNYADAELQHQQLEQKHSSAQLETQREKLHRGQPARQILIQISPLFEKSSLRQKQLH
AQSTQRTQELHALEQLLATKRLAYKEKRQHLNDLEKQIDLQRRVIGLEQERARLVAGDPC
PLCGSREHPAVKTYQTPALSDSEQRRDALRIEVENLSREGSELGERHKLMLQTQNQQQQE
IQAVEAEVMQYQQRWAQATAALELSLAIDDREGLESYLNEINQQEEALQNTLRQREMLSK
NWQLAKDALNSIQQEANQTLQQISLLELSTQTQSKQLNEWREDYGKQLAQQQHRDIALTD
ELHKLQLTAPVSGNEAEWLEQRSNEFTLWQQRQNHSQKLALENTRLMAEEHSLSQTCTAL
ETQWQTQHQLCSELETRLKQMQAERQSLLDGRSVDEVRRSLMETEQQVENQLQQAQQAEN
QIRQQLDKLGGELESAQQQRLLLEQRLSQQQTEFEQALANSQFTDEDTLIAALLDENELK
RLIALREQCKNQLSQAHAFLQQAESELAQWMTQRPENLDIHATLENLNQQLATLAEQLRE
NSVQQGQIQQQIRSDAERKQGQQSLFARIEQSRQEYEDWSYLNQLIGSSSGDKFRKFAQG
LTLDHLVYLANQQLARLHGRYLLQRKTSDALELEVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTSIDSLFLDEGFGTLDAETLDTALDALDTLNATGKMIGVISHVEAMK
ERIPVQIKVKKVNGLGISRLEVQYAVGSGE
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagcctacggttaaaaaatatcaactcgctcaagggcgaatggaagatc
gatttcacccgtgaagactttgccaataacggcttatttgccatcaccggcccaaccggc
gcggggaaaacgacgctgctcgacgcactctgtttggcgctgtatcaccaaacgccgcgc
ttgaaagtgtcgccaacgcaaaatgagctgatgacacgcggcaccgccgaatcgttggcc
gaagttgaattcgaagtgaaaggcgtcggctatcgcgccttctggagccagcgccgcgcc
aataacaagccagatggcaatttacaaacaccaaaggttgagcttgcacatatcgccgat
ggtgaaatcatcaccgacaaaatccaaaccaagctgcataaaattgccgatattaccggt
ttagattttggccgtttcaccaagtcgatgatgctgtcacagggccagttcgccgccttc
ctcaacgccgatccggccgagcgggctgaattactggaagaactcaccggcaccgaaatt
tatgggcagctatccgagcaaatattccagcgtttcaaacaggcaaaaatcgatcttgat
accctgcatgaacgcgccgcaggcgtagagctgctcagcgaagaagcgcttaaccagctt
tccgagcggttgtctgaattacaacgtgaagaacagcagcaaacgtctttgcgtcaaacg
ctgatgaccgatctccagtggctgcaaaaaagccaagagctcagccaaaaccgagaacag
tgcactcagcgcgttaccgcggcatcgcaacaatggcaaaccgcccagccggaagtttta
cgccttgaacgcagtgaaccagctgaaaaactgcgtcctctattattcacgttacaccag
acacgcgctgatttagcatcagcaactcaaagccagcaacagcgtgagcagcagcgccaa
cagctgacttcgcagctagcgttactgcaaactgcgtcatcacaagcgctgcatgccaaa
cagcaacaccagcagcaacgtaccgccacggaaacgctgatcaaccaacacgtggtgcca
cttgattcgcggctgacgcagatccgcgaagacctgttagctcagcagcaaaaactcacg
caactcagtgaagaaaaacaaaagcaggaaactgcgctgaagcaaaaccgagaaaagcta
cacgctcagcagcaggaaatcagccaacttcagcaacagttggcagacacggctcaacac
gcggaatggaataatcacttaggccgttggaaaagccagttcgagcaatctgccgaacac
tgccaaagcttaaacgaactgcgtaaacgcattgccgatgcagaaaaaaacatcgccacc
gaaaccgaaaaactcacggctcttcagcaggcgggctccctactcaatcagcgtatagct
caacagcaaaaaaactacgccgacgcagaattacagcatcagcagctggagcagaaacac
agttcagcccagctagaaacacagcgtgaaaaattgcaccgcgggcaacctgcgcgccaa
attttgatacaaatcagtccactgttcgaaaaatcctcactacgacagaaacaactgcac
gcgcaaagtacgcaacgcacgcaagagctgcacgctctggaacagcttttagccaccaaa
cgcttggcttataaagagaaacgtcagcatctgaacgatctggaaaagcagatcgatcta
cagcgtcgagtgatcggactcgagcaagagcgtgcgcgtttagtggctggcgatccctgc
ccgctctgcggatcgcgggagcatccggcggttaaaacctaccaaacacctgcgctttca
gacagcgaacagcgccgtgatgcgcttcgcattgaagttgaaaacctcagtcgcgaaggc
agcgagctgggggagcgccacaagctgatgctgcaaacccaaaatcagcaacagcaagaa
atccaagccgttgaagctgaagtcatgcagtatcagcagcgctgggctcaggccacagcg
gcgctcgaactcagcttagcgattgatgaccgtgaggggctggaaagctatctcaacgaa
attaatcagcaagaagaagctcttcaaaacacactgcgccagcgagagatgttgagcaag
aactggcagctggcgaaagatgcgctgaacagcattcagcaagaagcgaaccaaacgctc
cagcaaatcagcctgttggaattgagcactcaaacacagagcaaacagctcaacgaatgg
cgcgaggactacggtaaacagttagcgcagcagcagcaccgtgacatcgcccttaccgat
gaactgcataaactgcagttaaccgcgcctgtctctggaaacgaagccgaatggctggaa
cagcgcagcaacgagtttacgctctggcagcagcgccaaaaccacagccaaaaactggcg
ctagaaaacacgcgcctgatggcggaagagcacagcctaagccaaacctgtaccgcactg
gaaacacagtggcaaacacagcatcagctttgttctgagcttgaaacccgcctgaaacag
atgcaggccgaacgccaaagccttctcgatgggcgcagcgtagacgaggtacgtcgttca
ttaatggaaactgaacagcaggttgaaaaccaacttcagcaagcgcaacaggctgaaaac
cagatacgacaacagctcgataaactgggcggtgagctcgaaagcgctcagcaacagcgc
ctgctgttggaacaacggctcagtcagcagcaaactgaattcgagcaggccctcgccaac
agccaatttactgatgaagatacgctgattgccgcgctgttagacgaaaatgaactcaaa
cggctgattgcgctgcgagagcaatgcaaaaaccaactctcgcaggcacacgcctttttg
cagcaggccgaaagcgaactcgcccagtggatgacgcaacgccctgaaaaccttgatatc
catgccacgctagaaaatctcaatcaacaactggctacgctagctgagcagctacgcgaa
aacagcgtgcagcaggggcaaattcagcaacagatccgcagcgacgccgagcgaaaacag
gggcagcaaagcctatttgcgcgtattgaacagagcaggcaagagtatgaagactggagc
tatctcaaccagctgattggctcgagcagcggcgataaattcagaaagtttgcgcagggt
ttaacattggatcatctggtctatttggctaaccaacagcttgcccgcctgcatggtcgc
tatttgctgcaacgcaaaaccagcgacgcgctggagctagaagtggtcgatacatggcaa
gccgatgcggtacgcgatacgcgcaccttatccggtggcgaaagcttcttggtgagtttg
gcgctggcgctggcactatccgatctggtcagccataaaaccagcattgattctctgttc
cttgacgaaggttttggcacgctggacgcagaaacccttgataccgcgcttgatgccctc
gatacgctcaacgcaaccggcaaaatgattggcgtcatcagccacgttgaagccatgaaa
gaacgtataccggtgcagataaaagtgaagaaggtgaatgggctagggatcagccgcttg
gaagtccagtatgcggtggggagtggggaataa
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integrated database retrieval system
