Hafnia alvei: AT03_17395
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Entry
AT03_17395 CDS
T03425
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hav
Hafnia alvei
Pathway
hav03030
DNA replication
hav03430
Mismatch repair
hav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AT03_17395 (dnaE)
03430 Mismatch repair
AT03_17395 (dnaE)
03440 Homologous recombination
AT03_17395 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hav03032
]
AT03_17395 (dnaE)
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_17395 (dnaE)
Enzymes [BR:
hav01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AT03_17395 (dnaE)
DNA replication proteins [BR:
hav03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AT03_17395 (dnaE)
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AT03_17395 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AIU73994
UniProt:
A0A097R5K2
LinkDB
All DBs
Position
complement(3774648..3778130)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKVGPLVKKVAALGMPAFAITDHTNMCGLVKFYGAAHGA
GIKPIIGADVLVKSEMLGDELSHLTILAANNTGYQNLTLLISHAYQRGYGADGPVIDRDW
LIEYREGLILLSGARQGDVGKMLLRGNQQLAHECVDFYQQYFPDSYYLELIRTGRPDEES
YLHFAVALAEERDLPVVATNDVRFLETGDFDAHEIRVAIHDGFTLDDTKRPKNYSAQQYM
RSEEEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGEMSTEDFLVAKSKQGL
EERLEFLFPDPEERAKRRPEYDERLEVELKVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDRVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPEPGMTLAKAFEAEPQ
LPEIYEADEEVRALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDSEGNHPVTQ
FDKSDVEYAGLVKFDFLGLRTLTIIDWALEMINARRAKAGEEPIDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
VSYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKNPVEM
AKQRGGFEDGAKARGVDGELAVKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINSGQYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIDARNEGGHFKELFDLCARTDTKKLNRRMLEKLIMSGAFDRLGPHRAALMN
SLNDALKAADQHAKAEAIGQVDMFGVLAEAPEQVEKSYSSVAPWPAQVVLDGERETLGLY
LTGHPITQYLKEIERYAGGMRLKDMHPTDRGKMTTAVGLVVAARVMTTKRGNRIGVCTLD
DRSGRLEVMLFTDALDKYQHLLEKDRILIASGQVSFDDFSGGLKMIARELMDISEAREKY
ARGLAISLTDRQIDDQLLNRLRDSLEPHRSGTIPVHLYYQRDNARAKLRFGAAWRVTPTD
RLLVDLRTLVGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaccacgtttcatacatttgcgcgttcacagtgactattccatgattgatggg
ctggcgaaagtcggcccattggtcaagaaagtggctgcgctaggtatgcctgcttttgcg
attactgaccatactaatatgtgtgggctggttaagttttatggcgcggcacatggggcc
ggaattaagccgattatcggcgctgatgtattggttaaaagcgaaatgctgggcgatgag
ctttctcatttgaccatactggcggcaaataacaccggctatcaaaacctaaccctgctt
atatcgcacgcgtatcaacgcggttatggtgccgatggcccggtcatcgatcgtgattgg
ctgattgaataccgtgaagggctgatactgctgtctggcgcacgccaaggtgacgtaggc
aaaatgctcctgcgcggcaatcagcagctagcacatgagtgcgttgatttttatcagcaa
tattttcctgatagctattatctagaacttatacgcactggccgccctgatgaagagagc
tatctgcattttgccgtggccttggctgaagagcgcgatcttcctgtcgtggctaccaac
gatgtgcgctttctagaaaccggtgatttcgatgcgcatgaaattcgcgtcgctatccat
gatggtttcaccttagacgatacaaaacgacctaaaaactacagcgctcagcagtacatg
cgcagcgaagaagagatgtgtgagctatttgctgacatccctgaagcgcttgaaaacagc
gtagagattgctaagcgttgtaacgtgacgatccggttgggggagtatttcctgccacag
tttccgaccggcgagatgtcgaccgaagacttcttggtggcaaaatccaagcagggtttg
gaagaacgtctcgagtttttattccccgatcctgaagagcgcgccaaacgccgtcctgaa
tatgacgagcgtttagaggttgaacttaaagttatcaaccagatgggattccccggctac
ttcctgatcgtgatggagtttatccaatggtcgaaagataacggcgtaccggtagggccg
gggcgtggttcaggtgcggggtcgttagtggcctatgcgctgaaaatcaccgatctggat
ccgctggagttcgatctgctgtttgaacgattcctgaaccccgaacgtgtttccatgcct
gactttgacgtcgacttttgcatggagaaacgcgatcgggttatcgatcacgtggctgag
atgtacgggcgtgatgcggtatcgcagattattaccttcggtaccatggcggcgaaagcg
gttatccgcgacgttggccgcgtgttagggcatccgtatggttttgtcgatcgtatatca
aaactagtgccgccagagccgggcatgacgctggcgaaagcctttgaagccgaaccacag
ttgccagaaatttatgaggcggatgaagaggttcgtgcgctgatcgacatggcgcgtaag
cttgaaggcgtcacgcgtaacgccggtaagcacgccggtggggtggtaatttcaccgacc
aaaattactgactttgcgccgctttactgtgactctgaaggtaatcaccccgtcacacag
tttgataaaagcgacgtagagtatgcaggcctagttaagtttgacttcttgggcctgcga
acgctgacgatcatcgactgggcgcttgagatgattaacgcccgccgtgctaaagcgggc
gaagagccaatcgacattgcggccattccgctcgacgataaaaaaagtttcgatatgctg
cagcgctcggaaaccacggcggtattccagcttgaatcgcgcggcatgaaagatttgatc
aaacgcctgaagcctgactgcttcgaagatatgatcgcattggtggcgcttttccgccct
ggtcctttgcagtcagggatggttgataactttatcgaccgtaagcacgggcgcgaagag
gtgtcttaccctgacgttcagtggcagcacgagtcactgaaaccggtgctggagccgacc
tacggcattatcctgtatcaagaacaggttatgcagattgctcaggtgctcgccggttat
acgctaggcggcgcagatatgcttcgtcgtgcaatgggtaaaaagaatcccgttgaaatg
gctaagcaacgcggtgggtttgaagacggggccaaagcgcgtggcgttgacggtgagctg
gcggttaaaatcttcgacttggtagagaaatttgccggttacgggtttaacaaatctcac
tccgctgcctatgcgctggtttcctatcaaacgctgtggctaaaggcgcactatcccgct
gagtttatggctgcggtaatgaccgccgatatggataacaccgaaaaagtcgttggcttg
gtggatgaatgctggcgcatggggctaaaagttctgccgccggatattaacagcgggcag
tatcatttccatgtgaatgacgatggcgaaattgtttacggcatcggtgcgattaaaggc
gtgggtgaggggccgattgaggctatcatcgacgcgcgtaatgaaggcggccatttcaaa
gagttatttgatctgtgtgctagaacagacactaaaaagctaaaccgacgtatgctggag
aagctcattatgtctggtgcgtttgaccgtttaggtccgcatcgtgccgcactgatgaac
tcgctgaatgacgcattgaaagccgcagatcaacatgccaaagcagaggcgattggtcag
gtggatatgtttggcgtgctggccgaagcacctgaacaagttgagaaatcctatagcagc
gttgctccgtggcctgctcaggtggtattggatggcgagcgtgaaacgttagggttatac
ctaacaggacaccccatcacccaatacctgaaggagatagagcgctacgccggtggcatg
cgcctaaaagatatgcatccgacggatcggggcaaaatgaccactgcggttgggctcgta
gtagcagcgcgagtcatgaccaccaagcggggtaaccgcatcggggtttgtacactggat
gaccgttccggccgtctcgaagtgatgctatttaccgatgcgctcgataaatatcaacat
ttgctggaaaaagaccgtatcctgatagccagcggacaggtcagctttgatgactttagc
ggtgggcttaaaatgatcgcccgcgagctaatggacatcagtgaagcacgcgaaaaatat
gcgcgtgggcttgctatctcgctgactgacaggcaaattgatgaccagcttttaaaccgt
ctccgtgactcgttggaaccacatcggtcggggacgattccagtgcatttatactatcaa
cgtgataatgcacgcgctaagttaagatttggcgcggcctggcgggtaacgccgacagat
cgcctgctagttgaccttcgtactctggtgggtaatgaacaggttgaactggaatttgac
taa
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