Hafnia alvei: AT03_17595
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Entry
AT03_17595 CDS
T03425
Symbol
recD
Name
(GenBank) exonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
hav
Hafnia alvei
Pathway
hav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AT03_17595 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_17595 (recD)
Enzymes [BR:
hav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AT03_17595 (recD)
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AT03_17595 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
Helicase_RecD
AAA_11
SH3_13
AAA_22
UvrD-helicase
SLFN-g3_helicase
nSTAND3
PhoH
AAA_16
MukB
UvrD_C
AAA_28
DEAD
DUF6511
CbiA
DO-GTPase1
T2SSE
Mg_chelatase
TrwB_AAD_bind
Flavi_DEAD
AAA_24
Motif
Other DBs
NCBI-ProteinID:
AIU74952
UniProt:
A0A097R8A5
LinkDB
All DBs
Position
complement(3816847..3818703)
Genome browser
AA seq
618 aa
AA seq
DB search
MIFDLLLNMGAQKYLRSLDVQFARLMANQGQPHLALAAALVSLETASGHVCLPLSQLSLT
SLNKQFPDFANELSQLIGDMDEAAWQACLLAEAEVSDGSYPAPLVLQNQRLYLQRLWQDE
GVVATFFAGNEAVSDESAPALSAILSQLFPARSEDAEVNWQQVAAAVAATRQVSVISGGP
GTGKTTTVARLLTALVRLHPQRKLRIQLAAPTGKAAARLTESLGKAVEALGLTPAEHEVI
PQEAYTLHRLLGAQPNSIRLRYHRENPLHVDVLVVDEASMVDLPMMSKLIAALPQRARLI
LLGDRDQLASVEAGAVLGDLCRFSEFGYRPERAKQLSVLCQTAIPAGAEQPDIAVRDSIC
LLRKSYRFDANSGIGQLASAVNGGDVVAARRCFDGKFSDISWSPMTKDEDYSTLIQTCVE
GYRSTLQRVREQADAAEVLESFSRFRLLCALREGPFGQSGLNDRIELALAKARLIHKPMQ
AHQRWYSGRPVMVTRNDSSLGLFNGDIGIALADAENNIRVYFQLPDGSIKSVQPSRLPQT
ETAYAMTVHKSQGSEFEHTLLVLPADFSPIVTRELLYTAITRAKNQLTLFSREQILKTAI
RTPTLRRSGLMERMMLPV
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
ctgattttcgatctgctgttaaacatgggcgcgcaaaaatacctacgttctctggacgtt
cagtttgcgcgcttaatggcaaatcaagggcagccgcatctggctttggcggcggcgctg
gtgagtttggaaacggcttcgggccatgtgtgtttgccgctgagtcagctcagtttaacc
tcgctgaacaaacaatttcctgattttgctaacgagcttagccagctaattggcgatatg
gatgaggccgcatggcaggcatgtttgctggctgaggccgaggtcagcgatggcagctat
cccgcaccgctggtgttgcaaaatcaacgcttatacctgcaacgcctttggcaggatgaa
ggcgttgtcgccactttctttgcgggcaacgaggcggtgtcagatgaatcagcgcccgct
ttatcggcgattttgtctcagcttttccccgcaaggtctgaagatgctgaggttaactgg
cagcaggtcgctgccgccgttgctgcaacgcgccaagtttccgttatctctggtggccct
ggtacaggaaaaacgactacggttgcgcgtttgctgacggcgctggtacgtttgcatccc
caacgtaaactgcgtattcaattagctgccccaacgggcaaagcggctgcacgcttgacc
gaatcattgggtaaagccgttgaagccttgggattaacccccgccgagcacgaagtcatt
ccccaagaggcgtatacgttgcaccgcctgctaggtgcgcagccgaacagtattcgtttg
cgttaccaccgcgaaaatccgttgcatgtcgatgtgctggtggtggatgaagcctcgatg
gtggatttgccgatgatgtctaaacttatcgccgcgctgcctcagcgtgcacgactgatt
ctattaggcgatcgcgatcagttggcatcggtggaagcgggggcggtcttaggtgacctg
tgccgttttagtgagtttggctatcgccctgagcgcgctaaacagctgtctgtgctgtgt
cagacggcgattcccgcaggggccgaacagccggatattgcggtacgcgacagcatttgt
ttactcaggaagagctatcgctttgacgctaactctggcatcgggcagctagcctcagcg
gttaatggcggagatgttgtcgcagctaggcgctgttttgatgggaagttctcggatatc
tcatggtcaccgatgacgaaggatgaagactattccacgcttatccaaacctgcgttgag
ggctatcgctcaacgttgcaacgggtacgggaacaggctgatgcggctgaagttcttgag
agtttctcacgttttcgtttgctgtgtgcactacgtgaggggccgtttggacagtctgga
ctgaacgatcgtattgagctggccttagctaaagcaaggcttattcataagccgatgcag
gctcatcagcggtggtacagcggtcgtccggtgatggttacgcgcaatgatagctcgttg
ggattgtttaacggtgatatcggcattgcgttggctgatgctgagaataacattcgtgtg
tatttccaactgcctgatggctcgattaaatctgtccagccgagccgtttaccgcagacc
gaaacggcctacgcgatgacggtgcataaatcgcagggctctgagttcgaacatactctg
ctggtgctgcctgccgatttttcacctatcgtgacgcgtgagctgttgtatacggctatc
actcgtgcaaaaaatcagttaacgctgtttagccgcgagcaaatcttaaagacggcgatc
cgcacgccaactctgcgtcgaagcgggttgatggaacggatgatgttgcccgtttag
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