Hafnia alvei: AT03_19725
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Entry
AT03_19725 CDS
T03425
Name
(GenBank) regulatory protein CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
hav
Hafnia alvei
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_19725
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AT03_19725
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
DUF948
DUF7477
Motif
Other DBs
NCBI-ProteinID:
AIU74403
UniProt:
A0A097R6N6
LinkDB
All DBs
Position
complement(4325487..4327388)
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AA seq
633 aa
AA seq
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MRITTKLFAFITVLVALAMLLMLLGSTYSFFNQSHHRAENQLNALATTIDQLLLTEPRSN
IKKWLPVVMRSSGVNEIIVHNNSHQVYQLKLPTSYNAWDTLTNQRYVDAPLMHHPGYSLK
MVYIDPTASYTRSLETMFPVTVSIGLMILVLLFSYRWLREQTLGLEKLERRARKILGGER
ENAVRGDVHEFPPNASSAIDRLLSDLADAREERGRVDTLIRAFAAQDSRTGLNNRLFFDN
QLTTQLEDEGAHGVVMVIRVPDWESMAGLPGKREREEYRYSLVNMLSTSVMRYPSGLLAR
YFQNNFAVLLPHRSLKEAEGFASQLINSVSAIPPANGIDSEEVLHIGISLYHYGQSTEQV
MDQAEQAARNAVLQGSNGWFIDSNPVPEVVRGSVKWRTLLEQTLARGGPTLLQKEAVNVS
GEVHHHDILPYIYDGGQALPSAEYYPLVQQLGMAESYDRQMLLQIIPLLRHFSAEKLAFP
VSIDSLLQRSFQRWLRDTLLQSEKSLRQRIFFELTEADVSQHIDRLRPVVRLLQGLGCHI
VISQAGLKVVSTSYIKQLQVALVKLHPGLVRNIHKRVENQLFVQSLTGACEGTSAQVFAA
GVRTKEEWQVLKDKGIAGGQGDFFAKPRPVSRV
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgcgtatcacaaccaagttgtttgcgtttattacggtcttagtggcattggcgatgttg
ctgatgttgctgggaagtacatacagttttttcaatcaaagccatcatcgggctgaaaac
cagcttaatgccctcgccacgactattgatcagctgttgttgactgagccgcgcagcaat
atcaaaaaatggctgccggtggttatgcgctcatctggcgtaaatgaaatcatcgtccac
aataattctcatcaggtctatcagcttaaattaccgaccagttacaacgcgtgggatacg
ctaaccaaccagcgctatgttgacgcgcctttaatgcatcatccaggctatagcctaaaa
atggtgtatatcgatcccacggcgagctatacacgctcgctggaaaccatgtttcccgtg
acggtttctatcggtctgatgattttggtgctgctatttagctatcgctggctacgtgaa
caaacgctggggctcgaaaagctagagcggcgggcgcggaaaatcttgggtggtgagcga
gaaaatgcggttcgtggcgacgtacatgagtttccacctaacgcgagtagcgctatcgat
cgtctactctccgatctggccgatgcgcgcgaagagcgcgggcgggtcgataccttgatc
cgcgcttttgcggcgcaagattctcgcaccggcctcaataaccgtctcttttttgataat
caactgacgacgcagttagaagatgaaggcgcgcacggcgttgttatggtgatccgcgtg
ccagactgggaatcgatggcgggtctgccaggtaaacgcgagcgcgaagaataccgctat
tcgctggtgaatatgctgtcgacgtcggtcatgcgttatccatctgggttattagcccgc
tatttccaaaacaattttgccgtgttgcttcctcatcgatcgttaaaagaagccgaaggg
tttgcatctcagctcattaactcggtcagcgctattcctcctgccaacgggattgatagc
gaggaagtattgcacatcgggattagcctttaccattatgggcaaagtaccgagcaggtg
atggatcaggccgaacaggcagcgcgcaacgcggtgctacagggcagtaacggctggttt
attgatagtaaccccgtgccggaagtggtacgcggtagtgtgaaatggcgcacgttgtta
gaacaaacgcttgcacgaggcggcccaacgctgttgcaaaaagaagcggtcaacgtgagt
ggagaagtgcatcatcacgatattcttccttatatttacgatggggggcaggcgcttcca
agcgcggaatattatcctctcgttcaacagcttggcatggctgaaagctatgaccgacag
atgttgcttcagattattcctttattacgccatttttctgctgagaaactggcctttccg
gttagtattgactcattattgcagcgcagtttccagcggtggctgcgtgacacgctgctt
cagagtgaaaaatcgcttcgccagcgtattttctttgaactgactgaagcggatgtgagc
cagcatattgatcgtttacgcccggttgtacgcttgctgcaaggtttgggctgccacatt
gttatctctcaggccgggctcaaagtggttagtacttcttatatcaagcaattgcaggtg
gcgttggtaaaacttcatcctggcttggttcgtaatatccataaacgcgtagaaaatcag
ttgttcgttcagagcctaacgggcgcgtgtgaaggaacgtcggcgcaggtttttgccgca
ggcgtgcgaactaaagaagaatggcaggtactaaaagacaaagggatcgccggtggccaa
ggcgatttttttgcaaaaccaaggcctgttagtcgtgtgtaa
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