Helicoverpa armigera (cotton bollworm): 110369919
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Entry
110369919 CDS
T05609
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
haw
Helicoverpa armigera (cotton bollworm)
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
haw03016
]
110369919
Enzymes [BR:
haw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
110369919
Transfer RNA biogenesis [BR:
haw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
110369919
Prokaryotic type
tRNA splicing ligases
110369919
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
DUF5077
Motif
Other DBs
NCBI-GeneID:
110369919
NCBI-ProteinID:
XP_021181233
LinkDB
All DBs
Position
9:join(6496153..6496444,6496910..6497040,6497243..6497947,6498029..6498193,6498532..6498759)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINPYCWRIKKGFQPNMNVEGVFYVNSTLEKLMLDELKNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSIGLPDVHSGYGFAIGNMAAFDMADPQSIVSPGGVGFD
INCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KYAAGKMGIERLGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIETNDRQLACARIN
SVEGQDYLKAMAAAGNFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKME
EHVVDGKVKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKEVLTKLEELGISIRVASPKLVMEESPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgcgtcagtacaatgaagaattgaagtatcttgaaaagatcaatccatattgc
tggagaatcaaaaagggttttcagcccaacatgaacgtggaaggggttttttacgtaaat
tcgacactcgaaaagttaatgttagacgagttgaagaattcctgtagaccaggaatgact
ggaggctttctcccgggcgtgaagcaaattgcgaatgttgcggctttaccgggtatcgtg
ggccggtctattggtttgccggatgtacactctggatatggtttcgctataggcaatatg
gcagcttttgacatggctgatccacagtcaattgtctctcccgggggtgtgggttttgat
attaactgtggagtccgtcttctaagaaccaatctacatgagaaagatgtccagcctatt
aaggagcaactcgcacagagtttatttgaccacataccagttggtgtggggtctaaggga
ataattcctatgaatgctagagacctagaagaggctctagaaatgggaatggactggtct
cttagggagggctatgtctgggctgaagacaaggaacattgtgaagagtatgggcgtatg
ttaaatgctgatccttccaaagtcagtctgcgtgccaaaaagagaggtttaccacagctg
ggtaccttgggtgctggtaaccattatgcagagattcaagtagtagatgaaatctatgat
aaatatgctgctggaaaaatgggtattgaacgacttgggcaagtgtgtgtaatgattcat
tctggaagtagagggtttggccatcaagtagctactgatgctcttgttcagatggagaaa
gctatgaaaagagatcagattgagacaaatgacaggcagttggcttgtgctagaatcaat
tctgttgaaggtcaagactatctcaaggcaatggcagcagctggtaactttgcgtgggtc
aacagaagttcaatgacattcttgacccgccaagcatttgccaagcaatttaaaatggca
cctgatgacctggatatgcatgtcatatatgatgtatcccataacattgcaaagatggaa
gaacatgttgtagatgggaaagttaagaccttattagtacacagaaagggttcgacaaga
gcttttcctccacatcacccactcatacctgtggattaccaattgactggtcagccagtc
ctgattggtggaactatgggcacatgcagctatgtattgactggcactcaccagggcatg
actgaaacatttggatctacctgtcatggagctggtcgagctttatcccgggcaaagtca
aggaggaacatagattacaaagaagttctcacaaagttagaggaactgggtatttctatt
agagttgcatcaccaaagttggttatggaagagtctcctgaatcctacaagaacgtcaca
gacgtagttaatacttgccatgcagctggtatcagtaagaaaactgtgaagttacgacct
attgcagttatcaaaggctga
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