Helicoverpa armigera (cotton bollworm): 110373118
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Entry
110373118 CDS
T05609
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
haw
Helicoverpa armigera (cotton bollworm)
Pathway
haw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110373118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haw03019
]
110373118
03041 Spliceosome [BR:
haw03041
]
110373118
Messenger RNA biogenesis [BR:
haw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110373118
Spliceosome [BR:
haw03041
]
Complex B
Other components
Prp19-related factors
110373118
Complex C
110373118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
Mad3_BUB1_I
NRDE-2
PPR
DHR-2_Lobe_A
ARM_TT21_C
TPR_10
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
110373118
NCBI-ProteinID:
XP_021185948
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All DBs
Position
6:join(4640382..4640420,4640825..4643311)
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AA seq
841 aa
AA seq
DB search
MPILDGKEIDIFFSEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKHEINMIYERALKEL
PGSFKLWYNYLKLRRSQIRGKCITDPCFEDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITGTRKAFDSALRALPITQHHRIWPLYLSFLKKHNISETAVRVFRRYLKLCPEDTEEYI
DYLISINKLDEAAVKLAQIVNNENFQSKHGKSNHQLWNELCELISKNPDQIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPSPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEDKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYEKNEQIEDARLIFEKATQ
VNYAKVDDLASVWCEWAEMEIRHENYEDALQLMQRATVLPTRKVAYHDDTETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMAVYERATTAVLTEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDEK
AREMCVRFSEMETRLGEIDRARAIYAHCSQMCDPRITADFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NISFVRGETQGLKESADKVVNPDEIDIDEDSENSEDEGEVAPVQKKEIPAAVFGGLVKDT
D
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcctcgacgggaaagaaatcgatatattcttcagcgaagaagatctgccatat
gaggaagaaatattgaggaatcctttctcagtcaaacattggcttagatacatagaacac
aagaaagctgcacctaaacatgaaataaatatgatctatgagagagctctaaaagagtta
cccggatcatttaaactgtggtacaactatctcaaacttaggagaagtcaaatacgaggc
aaatgcattactgacccttgttttgaggatgtcaataattgttttgaaaggtcattagtg
tttatgcataaaatgccaaggatatggatggactactgcacatttctcactgatcaatgt
aagataacaggaacaagaaaagcctttgatagtgctctgagggctttaccaataacacaa
catcacagaatatggcccctttacctgagctttctaaaaaaacataatatttctgaaaca
gcagttagggtctttagaagatacctcaaattatgtccagaagatactgaagaatacatt
gattatttaatttcaattaacaaattggatgaagctgcagttaagttagctcaaatagta
aacaatgaaaattttcaatcaaaacatggaaaatctaaccaccagctgtggaatgaactc
tgtgaattaatttctaaaaaccctgatcaaattcattctcttaacgtggatgccatcatt
agaggtggattaagacgttatactgaccagctaggacatttatggaattctcttgctgat
tactatgtaagaagtggattatttgaaagagcccgagacatctatgaagaagctatacaa
accgtcaccactgtaagagattttactcaagtatttgatgcctatgcccaatttgaagaa
ttgagtttgagcaagaaaatggaagaagttgctaaaaagcctagccctactgaagatgat
gatatagatcttgaactaagacttgctagatttgaataccttatggaaagaagattatta
ttgctgaactctgtacttctgagacaaaaccctcataatgtggctgagtggcataagaga
gttaaactttatgaagataaaccacatgagatcattgatacctacactgaggctgtacaa
acagtagatcctaaactagctgttggtaaattgtacaccttgtgggtaggctttgcaaaa
ttttatgaaaaaaatgagcaaatagaagatgcaaggcttatttttgaaaaggcaacgcaa
gtaaactatgctaaagtagatgacctggcctcagtctggtgtgaatgggcagaaatggaa
attagacatgaaaactatgaggatgctttgcagcttatgcaaagagctactgttttgcca
accagaaaagttgcataccatgatgataccgagacagtgcagatgaggttgtataaatcc
ttaaaagtctggtctatgtatgcagatttagaagaaagttttggtacttataaatcatgt
aaagcagtttatgaccacataatagacttaaaaattgcaaccccacaaattataataaat
tatggcctctttttagaggaacacaattactttgaagaagcttttagagcatatgaaaaa
ggtatagcattatttaagtggccaaatgtttatgacatttggaatacatacctaaccaaa
tttttaaaaagatatggtgggtctaaacttgagagagctagggatttatttgaacaatgt
cttgaacattgcccaccagaatttgcaaaatccatttttctactatatgcaaagttagaa
gaagagcatggattggcaagacatgctatggctgtttatgaaagggcaaccactgctgtc
ctaactgaagaaatgtttgaaatgtttaatatttacattaaaaaagctgctgagatatat
ggtgtgcctaagacacgtcaaatatatgaaaaggccattgaaactcttcctgatgaaaaa
gcaagggagatgtgtgtacgtttttctgaaatggaaactcgtcttggcgaaattgacagg
gctcgagctatctatgcacattgtagtcaaatgtgtgatcctagaattacagcagacttt
tggaacacatggaaagagtttgaagtacgacatggaaatgaagacacaatgagggaaatg
ctaagaattaaacgaagtgttcaggccacatataacacgcaagttaatatgatgtcagct
caaatgttgagttcagcagctcaagcagcaggtactgtttcagaccttgctcctggtatg
aaggatggtatgagaatgttggaggctaaagctgctgagatggctgttcaaagcaagggt
aatatttcatttgtacgaggtgaaacccaaggcctcaaggagagtgctgataaagtggtt
aatcctgatgaaattgacatagatgaagattcagaaaacagtgaagatgagggagaagtt
gctcctgtacagaaaaaagaaattcctgctgctgtttttggagggcttgttaaagacact
gactga
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