KEGG   Helicoverpa armigera (cotton bollworm): 110373922
Entry
110373922         CDS       T05609                                 
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
haw  Helicoverpa armigera (cotton bollworm)
Pathway
haw03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:haw00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    110373922 (pcf11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:haw03021]
    110373922 (pcf11)
   03019 Messenger RNA biogenesis [BR:haw03019]
    110373922 (pcf11)
Transcription machinery [BR:haw03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     110373922 (pcf11)
Messenger RNA biogenesis [BR:haw03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     110373922 (pcf11)
SSDB
Motif
Pfam: CID Pcf11_helical Pcf11_C zf_PCFS4 Pfc11_Clp1_ID zf_UBZ VHS
Other DBs
NCBI-GeneID: 110373922
NCBI-ProteinID: XP_063895391
LinkDB
Position
19:join(10497587..10497739,10498827..10498958,10499040..10499216,10499627..10499821,10501869..10501991,10502235..10502976,10505963..10506119,10506459..10506745,10506860..10508431,10508658..10508997,10509390..10509616,10509976..10510217,10510625..10510801,10511232..10511406,10511946..10512304)
AA seq 1685 aa
MSKEVAEEYASSLADLTVNSKPLINMLTILAEENIDHAGVIVETVEKHLEKVHPDIKLPV
LYLVDSIIKNVGGAYTQKFSQSIVNMFTRTFKQVIVDEKIRSQMFKLRETWHDVFPATKL
YQLDVKVNLIDPAWPIQAQPQQSNIHVNPNFLKKSVGATTSTSTAAAPVPVPVEEDEKMR
SILAKKEQELLMLQRKKVEMELEHMRRQVEIAEKTVTKKVPIVPPVNNVNSTNSVPAAAP
VHAVAPEVVANIPAKQRLGPPVNKTAGRIAPVSATLLTARRDPRLARHAAAPAAVTAPTV
RAPPAAPVPPVAIVAPAAAIAPNVFDIKPLERVTKRKNVITIDVRPEVEAKPRRRDPRLD
KRDPRRNRQRDERRREDKPEPERIPTPAYVDKLPDPKKISKMPPIPKISKTKRDADVVTP
KRKRDALRAERRRRRDEEAERQAKQPPAAKPAPPVTSPQKEARAAVTSPRKEARASPELV
TFKELRNYHKEHYMRRNRQQSDSPEPASVADIVTENKDVDLRVLPAVVNDTKAAAVAQKR
PSTEAVEVKAKKTKLDKFDVLFGNEDVDLRQLPQVDEVNPPPPPSITSSPKSDNKPDDEA
PVPSPKGSPKRDWNEVKKRDDKKTPSKLDLVRAKFAEVTKGKDRLGRPLLFSKSPSVERE
RRRTMSGDDMDLRDNDEQGFVENKKSISIIMSQAKEHFTDGQLDKNQYNTLMYQILQINE
KLKLKEAKQRESLEISKRKLKAQTLDENHKVPSPKSSPTERNRFGDIDERITPSVFMDTP
PDSQGMLQDSDMRVNSDGVDGMKPKTLLPLPPGMPMFPPYQQMWRGPRPRGDDFGPRRFR
GPAPPFFRGKFDKRAPRPPFEPRMPMPPLPTPKMGMCQGDYPLPPYERTESPPPLGAPGF
AIPPTDFKVIEYIDQDPFKTIQIDGIPREIRFYGDTAVIMLDWDDPREIKFLPGCRRVTF
DNKDSIVLSFNEGYKQVEIDDQVFDIKFGSPTRELYINGRWYECFFGGQPLGVIIDGKPR
LVHLEGPMPQVDIGKAKRTDLVAGKINLIVNATQMHPVYLDAKVQKILVNGQFLTVRFVD
SLRTVLINEQPFKVEFGDLPKPIVVGSEKYFIRFSALPRNIKPGYIQIANMEGMGLPVLT
QVKKVEDIKEEDTNNMEVDQEPIVRPMKTPSPDNNTESLGLDMLASVMPSSTVPASGSEY
SVAEPLFAKPEKIPGLETPADEKPPVLPGLPILGNINVSDLFAKLVATGIVQVNNDNKEE
SKEEQKEEVKNKPKEDKNVIHRVDLMRPETFRVKQPGLVAKLYGGMQCSGCGARFPPEHT
VRYSQHLDWHFRQNRRDRDSARRAHSRHWHYDLSDWVQYEEVEDLEEREKSWFETGGSTT
TTAEATEAPAPVPTVTPSTAAPAPARHCCALCGDTFQQFYNEDKEEWHLRNSVRHNDDYY
HPLCFDDYKASLTKAEEPSKESSDDVQPIEKTEEAIEIKDVDDTVEEQSDNESVVEVVEE
AKDLDPVEIDEGEEDDVVFKAEPVEQVVVEDDADTDDETAATRAERDRLAEIDFSKVKVK
QEPVDPDDEPIVTAEEETVQARVDNTHATVESSIDGNLQLDAANAPATALPIGGIRINIS
KSLPSFINNNDDKMLEDISADDEPLPPGEEPELEYTLKPALEGVQFSRQPPVTRGNELSG
LCSIM
NT seq 5058 nt   +upstreamnt  +downstreamnt
atgtcaaaagaagtagcggaagagtatgcgtcgagtttggcggacctaaccgtcaacagc
aagcctctgatcaatatgttgacgatcctcgcggaagagaacatcgaccacgccggggtt
atcgttgaaacagtggaaaagcatttggagaaggtacacccagacatcaagctgcctgta
ctgtatttagttgattccattatcaagaatgttggcggtgcctacacacagaagttttca
cagagcattgtcaatatgtttaccaggacattcaaacaggtaattgttgatgagaaaatc
aggtcacaaatgttcaagttgcgagagacttggcatgatgtgttcccagccacgaagctg
tatcaactggatgtgaaagtgaacttgatcgacccagcgtggcctatacaagcgcagccc
cagcagtctaacatccatgtaaatccaaattttctgaaaaagtcggtgggagccactacc
agtaccagtactgctgcggctccggtaccggtaccagttgaggaagatgaaaagatgagg
agtatccttgccaagaaggagcaagagctcctcatgctgcagagaaagaaggtggaaatg
gagctcgagcatatgaggcggcaggtcgagattgctgagaaaactgttactaaaaaggtg
ccaatagttcctcccgtgaacaacgtgaactccacaaacagcgtcccggcggccgcgccc
gttcatgcagtcgcacccgaagttgtcgctaacatacctgctaagcagcggcttggaccg
ccggtgaataaaacggcgggacgcatcgcccccgtcagcgccaccctgctcaccgcgcgg
cgagacccgcgcctcgcgcgacacgcggccgcgcccgccgccgtcaccgcgcccactgtc
cgcgccccgcccgccgcgcccgtgccgcccgtcgccatcgtcgcccccgccgccgccata
gcacccaacgtcttcgacatcaaacccctcgagcgagtcaccaagcgaaagaacgtcatc
actatagacgtgcgccccgaggtcgaagccaaaccccgccgccgagacccgcgcctcgac
aagcgtgacccgcgccgcaacaggcagcgcgatgagcgacgccgggaggacaaacccgag
cccgagcgcatccccacgcccgcctacgtcgacaaactgcctgatcccaaaaagatcagc
aaaatgccgccgatacctaaaatctctaagacaaagagagacgcagatgtcgtgacgcct
aagaggaagcgagatgcgttacgtgctgagcgcagacggcggcgcgacgaggaggcggag
aggcaggccaagcagccgcccgcggccaagccggcgccgcccgtcacgtcgccgcagaag
gaggctcgcgcggccgtgacgtcgccgcgcaaggaggcccgcgcctcgcccgagctggtg
acgttcaaggagctccgcaactaccacaaggagcactacatgcgccgcaaccgccaacag
tccgacagcccggaacccgcaagtgttgctgatatcgtgacagagaataaggatgtagat
cttagggttttgcctgcggtggtgaatgataccaaagctgcggccgtggctcagaagcga
ccgagcaccgaggctgtagaagttaaggccaagaagactaaattggacaagtttgatgta
ctgttcggcaacgaagacgtggatctccgtcagcttccccaagtggatgaagtcaatcct
ccaccacccccatccattacatcatccccgaagtctgacaacaagcctgatgacgaagcc
cctgtaccgtcacccaaaggatcccccaaaagggactggaacgaagtcaaaaagagggat
gataagaaaactccttcgaaattggacctcgtaagggccaagtttgctgaagtgacgaaa
ggcaaagatagactgggcaggccgttgctgttcagtaaatcacctagtgtagaaagagaa
agaagacgcacaatgagcggtgacgatatggacttgagagataatgacgagcaaggtttt
gtcgaaaacaagaaatctatctccatcatcatgtcgcaagctaaagaacatttcacagac
ggacagttagacaaaaatcagtacaatacgcttatgtatcaaatactacagatcaacgag
aagctcaaactaaaagaggctaaacagagggagtccctcgaaatatctaaaagaaagctc
aaagcacaaactcttgacgaaaaccacaaagtacctagtccgaagtcttcaccgactgaa
cggaataggttcggagatatcgacgagaggatcacaccgtccgtgttcatggacacacct
ccagacagtcagggaatgttacaggactccgacatgagagtgaactcagatggcgtcgac
ggcatgaagccaaagactctgctacctctccctcctggcatgccaatgttcccgccatac
caacaaatgtggcgaggaccgagaccgagaggcgatgacttcggacccagaaggtttaga
ggtcctgccccaccattcttcagagggaagtttgacaaaagagctccgagaccgccattc
gaacctcggatgccaatgcctcctctgcccacccctaaaatgggcatgtgtcaaggagat
tatccattaccaccttatgaaagaaccgagtctccgccgcctttgggagctccgggcttc
gccatcccacccacagacttcaaagttattgagtacatagaccaggatccattcaaaact
atccaaattgacggcattcctagagagatcaggttctacggtgatactgccgttatcatg
ctcgactgggacgatcctagagaaattaaattcttgcccggatgtaggagagtgacgttt
gataacaaagactccatagtattatctttcaatgaaggctataagcaagtagaaatagat
gaccaagtgttcgatataaagttcggttcgccgactagagaattgtacataaatggcagg
tggtatgaatgcttctttggtggccagcctttaggcgtcattatagatgggaagccgaga
ctagtacatttagaaggtcccatgcctcaggtagatattggtaaagctaagcgcacggac
ttggtcgctggcaaaatcaaccttatcgtgaacgcgacacagatgcacccagtttacttg
gatgccaaggtgcaaaagatcttagtcaatggtcaatttttgaccgtacgcttcgtggat
tcactcagaacagttttgatcaacgagcaaccattcaaagtggagtttggtgatcttccg
aaacctatagtagttggtagtgagaagtacttcattagattctctgcgttgcctcgtaat
atcaagcctgggtatattcagatagcgaatatggaaggcatgggcttgcctgtgcttact
caagtgaagaaagttgaagatattaaggaagaagacacaaataacatggaggttgatcag
gagcctatcgtcaggccgatgaagactcccagccctgataacaacaccgagagtttagga
ctcgacatgctagccagcgtaatgccttcaagtacggtaccagcatcaggctccgagtac
agcgttgccgaaccactattcgccaaacccgaaaaaatccccggccttgaaacacccgct
gacgagaaaccaccagttttaccaggcctaccaatattaggaaatattaacgttagcgat
ctgttcgctaagttggtagcgactggtatagttcaagtgaataatgataataaagaggag
agtaaggaagaacagaaggaagaagttaagaataaaccgaaggaggacaagaatgttata
catagagttgacttaatgaggcctgagactttcagagttaaacaacccggtctagtcgcc
aaactgtacggcggcatgcagtgctcgggctgcggcgcccgcttccccccggagcacacg
gtgcggtactcgcagcacctggactggcacttccgccagaaccgccgcgaccgcgactcc
gcccgccgagcacactcgcgacactggcactacgacctgtccgactgggtgcagtacgag
gaggtcgaggatctggaggagagagaaaagagctggttcgaaaccggcggcagcacaacc
acgacagcagaagctaccgaagcccccgcacccgtgcccaccgtgacgccctctacagca
gcccccgcgcccgcgcggcactgctgcgcgctgtgcggggacaccttccagcagttctac
aacgaggacaaggaggagtggcatctcaggaactctgtgcgacataatgatgattattat
catccgctgtgctttgatgattataaggcttctctcacaaaagccgaggagccgtccaaa
gagtcatcagacgacgtgcagcccatagagaaaacggaagaagccatagagatcaaagac
gtggacgacacggtagaagaacagtcggacaacgagtctgttgttgaagtcgttgaagag
gctaaggatttggatcctgttgaaatagacgaaggcgaggaagacgatgtagtcttcaag
gcggagccagtggaacaggtggtggtggaggacgatgcggacaccgacgatgagaccgcc
gccacacgcgctgagcgagacaggctggcggagatcgacttctccaaagtcaaggttaag
caggagccggttgatcctgacgacgaaccaatagtaacagcggaagaggaaacagtccaa
gctcgagtagacaacacacatgctaccgtcgagtcttcaatcgacggcaacctacaactc
gacgccgccaacgcgcccgccacggccctacccatcggaggcattcgcatcaacatatct
aagtccctaccctcctttatcaacaacaatgatgataaaatgctcgaagacatcagtgct
gatgatgagcccttaccacctggtgaagaaccagagttagagtatacgttaaaaccggcg
ctagaaggcgttcagttcagtagacaaccaccggtgacgagaggcaatgagttgtctggg
ttatgctcaatcatgtaa

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