Helicoverpa armigera (cotton bollworm): 110375127
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Entry
110375127 CDS
T05609
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
haw
Helicoverpa armigera (cotton bollworm)
Pathway
haw03020
RNA polymerase
haw03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110375127
09124 Replication and repair
03420 Nucleotide excision repair
110375127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haw03021
]
110375127
03400 DNA repair and recombination proteins [BR:
haw03400
]
110375127
Enzymes [BR:
haw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110375127
Transcription machinery [BR:
haw03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110375127
DNA repair and recombination proteins [BR:
haw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110375127
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
110375127
NCBI-ProteinID:
XP_021188795
LinkDB
All DBs
Position
3:join(7322810..7322890,7323557..7323826,7323907..7324213,7324634..7324925,7325003..7328430,7328514..7328702,7328897..7330035)
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AA seq
1901 aa
AA seq
DB search
MATTNDSKALVRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRASRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPS
IRRQGLDLTAEWKHANEDTQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLAENIRLL
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQHGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKEDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFSEDIIKELTESGYVISDLESEWEQLCKDREVLRQIF
PSGESKVVLPCNFKRMIWNAQKTFHINKRMPTDLSPIKVISGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSTVAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEMGGLGVGGVGGGMYFGVGTPSMTP
LMTPWSTQNTPGYGSSAWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSAWSPQPGSPG
SPGPPLSPYTSPAGASPSYSPTSPVYAPASPSLTPTSPHYSPTSPSYSPTSPNYSPTSPI
YSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPSSPSYSPTSPVYSPASPSYSPSSPNYTPTSPAY
SPTSPSYSPTSPAYSPTSPSYSPSSPKYSPSPNYSPTSPSVAGRSPTYSPTSPQYSPTSP
QYSPTSPAYSPSSPQHPGSTRYSPSSPNYSPSSPNYSPSSPGYSPSSTKYSPTSPTYTPT
SPNYSPSSPAYSPTGSGGPTTYSPTSPTYSPTSPNYDDSDD
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgaatgactcgaaggcgcttgtgcgccaagtaaaaagagtacaatttggt
atattatctccagatgaaatccgacggatgtcagtcacagaagggggaattcgtttcccc
gaaactatggagggtggcagacccaagcttggcggacttatggatccgcgacaaggggtg
attgacagagcatccagatgtcaaacttgtgctggaaacatgactgagtgtcctggacac
tttggacacattgacttagcaaaaccagtattccacattggttttataacaaaaacaata
aagatactcagatgtgtctgtttctactgttcaaagctgctcgtcagcccaactaaccca
aagataaaagaagttgtgatgaaatcaaaaggacagcctcgtaagagattgacctatgta
tatgacttatgtaaaggcaagaatatttgtgagggtggtgaggatatggatataggtaaa
gaaggagaagaaggcaaaagaggctcagggcatggaggttgtggtcactaccagccatcc
atcagaagacaaggtcttgatctgacagctgagtggaaacatgccaatgaagacactcag
gaaaagaaaataataatcactgcagaaagagtttgggaaatcctcaaacatatcacagat
gaagagtcctttatactgggtatggatcctaaattcgcgagacctgactggatgatagtg
acagttctgccagtaccaccactgtctgtgagaccagctgtagtgatgtttggctcagcc
aagaaccaggatgacttgacacacaaacttgctgacataatcaaagcaaacaatgagctg
atgaggaatgagcagtctggtgcagcagctcacgtgcttgccgaaaacataagactgctg
cagtttcatgtagccacatttgtagataatgatatgcctggaatgcctaaagctatgcag
aaatccggaaaacctctcaaagctataaaggcacgtctaaaaggaaaagaagggagaatt
cgaggaaatctcatgggaaaacgagtcgatttctcagcgcgtactgtcatcacgcctgat
ccgaacttgcgtattgaccaagtaggagtacctagatctatcgcacaaaacttgacattc
cctgaacttgttacacctttcaatattgacagaatgcaggaacttgtacgcaggggcaat
gcacagtatcctggcgctaaatatattgttcgcgataatggagaaagaatagatttaaga
tttcacccaaagccatcagatttgcatttacaacatggttacaaagttgaacgtcacttg
agggatgacgatcttgttattttcaaccgacaaccaacacttcacaagatgagtatgatg
ggtcacagagtgaaagtattgccatggtcgacattccgtatgaatttaagttgcacctct
ccctataacgccgatttcgacggtgacgaaatgaatcttcatgtaccacaatcaatggaa
acaagggccgaggttgaaaatatccacataacgccaaggcaaattattactccccaagca
aataaacccgtcatgggtattgtgcaggacacattgactgctgtaaggaaaatgactaag
cgtgacgtgttcctcacgaaagaacaagtaatgaatcttctaatgttcttacctacatgg
gatggtaaaatccctcagccttgcattttgaaaccacaaccattgtggactggtaaacaa
attttcactctgattattccgggtcccgtaaacatgattcgaactcattccacacatcct
gatgaagaagacgacggtccatataagtggatctctcccggagacacaaaggttgttgta
gaacatggtgaattgcttatgggcatcttgtgtaaaaagtcacttggtgcttcagcaggt
tccttgctacatatttgcatgttggaactgggtcatgagacggcaggtcgcttctacggt
aacattcaaactgtaatcaacaactggctattgctagaaggtcactctatcggtatcggc
gacacaattgccgatcctcagacttatcaagaaattcagcgcgccatcgtgaaagccaaa
gaggatgtcatagaagtcattcaaaaagctcacaacatggagctggaacctactcctggt
aacactctcagacagacattcgaaaatcaagtgaatcgtattctaaacgacgctcgtgac
aaaactggtggatcagctaagaaatctctcactgagtacaataacctaaaggctatggtg
gtagctggttctaagggttccaacattaatatttcccaggttattgcttgtgtagggcaa
cagaacgttgaaggtaaacgtattccatttggattccgtaaaagaacattgccgcatttc
atcaaagacgattacggtcctgagtctagaggtttcgtagaaaactcgtatcttgccggt
cttactccatctgaattctatttccacgctatgggaggtcgtgaaggtcttattgatact
gccgttaagaccgctgagactggatacatccagcgtcgtctgataaaggctatggagtct
gtaatggttcactacgacggtactgtccgtaattctgtgggacaattgattcagttgaga
tatggtgaagatggtctggctggagaaacagtagagttccagaacttgcctactgtcaag
ttatctaacaaggcatttgaaaagaaattcaaatttgatccctcaaatgaaaggtatttg
aagaggatcttcagtgaggacataataaaggagttgacagaatctggttatgtcattagt
gatcttgagagtgaatgggaacaactttgcaaggacagagaagtgttgcggcaaattttc
ccaagcggtgaatctaaagttgtattgccttgcaatttcaagagaatgatttggaatgca
caaaagactttccatataaacaaaagaatgcctacagatctgagtcccattaaggttatt
tcaggtgttaaagatctactgaaaaagtgcgttattgtagcgggtgaggatcggctgtcg
aagcaagctaatgaaaacgctactttactattccaatgtttggtgcgctctacgctttgc
accaagtttgtatctgaagaatacagactgtcaacagttgcttttgagtggttgattgga
gaaatcgaaacccgattccagcaagcccaggtgaatcccggcgagatggtgggcgccctg
gccgcccagtctctgggtgaacccgccacgcagatgacactgaacactttccatttcgcc
ggtgtgtcgtccaaaaacgtaactctcggtgtgccacgtcttaaggaaattatcaacatc
tctaagaaacctaaagctccatctctaacggtgttcttgactggaggagctgctagagat
gccgagaaggctaagaacgtgttatgtagactggaacacactacattgcgtaaggtgact
gcgaacacggctatttactacgaccctgacccgcaaaacactgttattgctgaagatcaa
gaattcgttaatgtttactatgaaatgcctgactttgacccaacaaagatttctccgtgg
ctgctgcgtattgaattagatcgcaagaggatgacggacaaaaaactgactatggaacag
attgctgaaaagataaatgctggttttggagacgacttgaattgtattttcaacgacgac
aacgctgagaagcttgttcttcgtattaggattatgaataatgaagaaagtaaattccaa
gacaatgatgaagaaacagttgacaaaatggaagatgacatgttcttgagatgtattgaa
gctaacatgttatcagacatgacactacagggtattgaggctatagccaaggtgtacatg
catttaccacagactgaagctaagaaacgtatcataatcacggaacaaggagaatttaag
gctattgctgaatggttattggaaactgatggtacttcgctaatgaaagtactttctgaa
agagatgtcgatcctatcaggacattcagtaacgacatttgtgaaatattccaagtactg
ggtatcgaggctgtgcgtaagtcagtcgagaaggaaatgaatgctgtgttgcagttctac
ggtctatacgtgaactaccgtcatcttgctttgctttgtgacgtcatgacggccaaaggt
catctcatggctattactcgtcacggtatcaacagacaagacactggtgcgctgatgaga
tgctcattcgaagaaacagtcgacgtgttgctggatgcagccagtcacgctgaagtagat
ccaatgagaggcgtctccgaaaatattattatgggccaactgcctagaatgggaactggt
tgtttcgatttgctacttgacgcggaaaaatgtaaactgggtatggagatgggaggtctc
ggtgtgggaggagtcggcggcggcatgtacttcggagtcggcactccatccatgacaccc
ttgatgactccatggtcgacacagaacactcctggatatggcagcagtgcatggtctcca
ggccaagtgggaagcagcatgacgccaggcggcccatcattctcgccatccggcgcgtcg
gacgcttcgggtctgtctccggcgtacagcgcgtggtcgccgcagcccggctcgccgggg
tcgccggggccgccgctgtcgccctacacgtcgccggccggcgcctcgccctcctactcg
cccaccagccccgtgtacgcgcccgcctcgcccagcctcacgcccacgtcgccgcactac
tcgccgaccagcccctcgtattcgccgacttcaccgaactattcgccgacctcgccgata
tattctccaacatcgccgagctactcccctacatcgcctggctattcgcccacgtcgccc
tcttattctcccacatcaccgagctactcgcctacttctccaagttattctccgacgagc
cctgcgtattcaccgacatcgccgagctattcgccaacgtctcctagctactcgccaacg
agtccgtcttactctccgactagtccatcgtactcccctaccagtcccgcgtactccccc
acgtcgccgggctattcgccatcttcgccgagctactctccgactagccctgtttacagt
cccgcatcaccaagttactccccgtcttcaccaaattatacaccaacatctccggcttat
tctcctacaagtccgtcatactcaccgacctcaccagcgtattccccgacttcacccagt
tattcaccatcttcgcctaaatattcaccatctcccaactattctccgacgtcaccgtca
gtcgcaggcaggagtcctacatactctccaacaagtccccaatactctcccacaagtccg
cagtactccccgacgagcccggcatattctccctcgtctccacaacacccaggaagcaca
cgttactcgccatcatcaccgaattattcaccgtcttctccaaattattctccatcctcg
ccaggatactcaccgtcttcgacaaagtattcaccgacgtctccgacgtacaccccaact
tcccccaactattcaccatcatcccccgcatactctccgaccggttcgggaggaccgact
acatattctccaacatctcctacatattctcctacttcacctaattatgacgacagcgac
gattag
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integrated database retrieval system
