KEGG   Helicoverpa armigera (cotton bollworm): 110377767
Entry
110377767         CDS       T05609                                 
Name
(RefSeq) exosome RNA helicase MTR4
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
haw  Helicoverpa armigera (cotton bollworm)
Pathway
haw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:haw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110377767
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:haw03019]
    110377767
   03041 Spliceosome [BR:haw03041]
    110377767
   03009 Ribosome biogenesis [BR:haw03009]
    110377767
   03016 Transfer RNA biogenesis [BR:haw03016]
    110377767
Enzymes [BR:haw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110377767
Messenger RNA biogenesis [BR:haw03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     110377767
Spliceosome [BR:haw03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    110377767
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    110377767
Ribosome biogenesis [BR:haw03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    110377767
Transfer RNA biogenesis [BR:haw03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    110377767
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk DEXQc_Suv3 Helicase_C ATPase_2
Other DBs
NCBI-GeneID: 110377767
NCBI-ProteinID: XP_021192448
LinkDB
Position
3:join(9758114..9758211,9758299..9758439,9758518..9758760,9758959..9759133,9759215..9759326,9759479..9759681,9760032..9760272,9760599..9760789,9760869..9760970,9761261..9761434,9761514..9761616,9761892..9762064,9762395..9762580,9763657..9763898,9764187..9764423,9764985..9765147,9765654..9765816,9766304..9766461)
AA seq 1034 aa
MADVNSLFDCFDEVAPNEASVQFPNIKKEDDVLEDSAANSSATETPNLKRLHDEVEDIEK
SSKKQRQEDDDDSELTSDINLELLNARIVIHTLETHEGCTHEVAIPPNHEYAPLVANTAE
PAKQYAFILDPFQKEAIMCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPI
KALSNQKYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVF
DEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEF
RPTPLQHYIFPAGGDGIHLVVDEKGIFKEDNFNTAMAVLSNAGDAAKGDQRGRRGGPRGG
NQTNIFNIVKMIMERNFAPVIIFSFSKKDCESYAMQMAKLDFNTIEEKKLVDEVFNNAMD
VLSEEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGL
NMPARTVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDEKVTPAVVK
GMVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQATIPDLIDKVKSKQ
KEYNALTVAEEHSIASYCSIRSQLDLLGAQFRSFITKPEYLKPFLQPGRLVKIKTEKHEF
DWGIIVNFRHRTGKGKKGEDNPLSSESVIIVDILLHVKKADGEDSEKVPCPPGEAGDVEV
VPVIHTLIYQISSLRVYYPKDLRPADNRKSVLKTIGEVKKRFPDGPPLLNPIKDMKINES
VFKECVERIKLLEERLYAHPLHNDKSRGALTAAYEKKQELHEELTLARAELKKAKSILQM
DELKKRKRVLRRMGYCTAADVIELKGRIACELSSADELLLTELIFNGVFNGLTSEQSAAL
VSCFVCDENSSQASASGEELRGVLRQLQEYARRIAKVSQDAKMDVDEDEYVGKFKCTLMD
VVLAWAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSEAIK
LLKRDIVFAASLYM
NT seq 3105 nt   +upstreamnt  +downstreamnt
atggcagacgtgaatagtttattcgattgttttgatgaagtggctccaaatgaagcttcc
gtacaatttccaaacataaaaaaggaggatgatgttttggaagatagtgctgcaaattcg
tctgctactgaaactcccaacctgaagcggttacacgatgaagtggaagatattgagaaa
tcttcaaaaaaacaaagacaagaagatgatgatgactctgagctgactagtgacataaat
ttagaacttctaaatgctagaatagtgatacatacactagagacacatgagggctgtaca
cacgaggtggcaataccgcccaaccatgaatacgcgcccctcgtagcaaacacagcagag
ccggcgaagcagtacgccttcatactggatccttttcagaaggaggctataatgtgcata
gacaacttgcagtctgtgttggtctctgcacacacctctgcaggaaaaactgttgtggct
gagtatgctatagctctgtctctgaaaaacaagcagagggtcatatacacaactcctata
aaagccctgtctaaccaaaagtacagagagttttccgaagagtttcatgacgtaggtctc
attactggtgatgtgaccataaatccttcagcttcttgtcttattatgaccactgagatt
ttaagaaatatgttgtatagaggatcagaaatcatgcgggaagtaggttgggttgtattt
gacgaaattcattacatgagagataaagagagaggtgttgtctgggaagaaactttaatc
ttgctgcccgacaacgtccactacgtgtttctgtcggccaccattcccaacgctcgtcaa
tttgcggagtgggtgtgtcgactgcactcgcaaccttgtcacgtggtgtacacggagttc
cgacctactccactgcagcattatatattcccggctggaggagatggcatacatcttgtg
gttgatgaaaagggtatattcaaagaagacaacttcaacactgctatggcagtactaagt
aacgccggtgacgcagcgaaaggggaccagcgtggtcgccgcggcggcccccgcggcggc
aaccagacaaacatattcaacatcgtcaagatgatcatggaaagaaacttcgctcctgtc
atcatattcagtttcagtaaaaaggactgtgagtcgtacgctatgcagatggcgaaattg
gactttaatacaattgaggaaaagaaactagtagatgaagtattcaacaatgcaatggac
gtattatccgaggaggatcgaaagctgcctcaggttgagaatgtgattccgttgctaagg
cgcggtattggcatacatcacggaggtctgttgcccattctcaaggaaaccattgagatt
ctgttcggcttgggacttattaaggctttgttcgcgacggaaacatttgccatgggtctc
aacatgcctgccagaactgtggtatttaccaactgccagaaattcgacggaaaagatttt
agattcataacttcaggcgaatacatccagatgtcaggtcgtgccggccgtcgaggtcta
gacgacaagggtatcgttatactcatgattgacgagaaggttacccctgctgtagtcaag
ggcatggtgcagggtaaagctgaccctattaactctgctttccatctcacttataatatg
gtcctcaatttgttgcgagtggaagaaataaatccagagtatatgttagagaggagtttc
ttccagttccaaaatcaagcgactattccagatctaatagataaggtaaaatcaaaacag
aaagagtataacgctttgaccgtggcggaggagcactcgatagcttcgtactgcagcatc
aggtcgcagctcgatctgttaggagcgcagttccgctccttcatcaccaagccggaatac
ttgaagcctttcctacaacctggacgtcttgttaagataaaaacagaaaagcacgagttc
gactggggtataatagtgaacttcagacaccggacaggcaagggtaagaagggggaggac
aacccactgtcatccgagtctgtcatcattgtggatatattgctgcatgtgaagaaagct
gacggagaagattcggagaaggtgccgtgtccacctggcgaggcaggagatgtggaagtg
gtcccagtaatccacacactcatctatcaaataagttctctcagagtatattatcctaaa
gacttaagaccagcagataacaggaaatcagtcctgaaaactattggcgaagtgaaaaaa
cgattccccgacggaccgccattgttgaatcctataaaagacatgaagatcaatgaatca
gtgtttaaagaatgtgttgagagaataaaactgttagaagaaagactttacgcccatcca
ctacataatgacaagagccgcggcgccctaaccgcggcttacgagaagaaacaggaactt
cacgaggaactgaccctggccagagctgagctgaagaaagccaagagtatactacagatg
gacgaactgaagaagaggaaacgagtgctcaggagaatgggctactgtaccgccgctgat
gtcatcgaacttaaaggacgcatcgcttgcgagctcagcagtgccgacgagctgctccta
acggagctgatattcaacggcgtgtttaacggcctgacgtctgagcagagcgcggcgctg
gtgagctgcttcgtgtgcgacgagaactcctcgcaggcctccgcctccggcgaggagctg
cgcggggtgctgcggcagctgcaggaatacgcccgcagaatagcgaaggtgtctcaggac
gctaagatggacgtggatgaagacgagtatgtgggcaagttcaagtgtacgctgatggac
gtcgtgctcgcgtgggcaaagggcgcctctttcctgcagatctgtaagatgactgatgtg
tttgaaggttccataatcagatgcatgcgtcgtctagaagaagtactacgtcagctctgc
caggcagctaagaacatcggcaacacagatctggagaacaagttcagcgaagccatcaaa
ctgctgaagagagacattgtgttcgccgccagtctctacatgtaa

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