KEGG   Helicoverpa armigera (cotton bollworm): 110378687
Entry
110378687         CDS       T05609                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
haw  Helicoverpa armigera (cotton bollworm)
Pathway
haw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:haw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110378687
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:haw03019]
    110378687
Enzymes [BR:haw01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     110378687
Messenger RNA biogenesis [BR:haw03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     110378687
SSDB
Motif
Pfam: CAF1 RNA_bind
Other DBs
NCBI-GeneID: 110378687
NCBI-ProteinID: XP_063896141
LinkDB
Position
2:complement(join(11771509..11771781,11772148..11772308,11772524..11772552,11787837..11787883,11788793..11788950,11789391..11789477,11789757..11789996,11790449..11790567,11791031..11791152,11791504..11791630,11791931..11792086,11792945..11793077,11793386..11793736,11793810..11793828))
AA seq 673 aa
MEVVRKNFKETLPLIKDSIEKADFLSIDAEFTGLINGRDVSIYDSPEDYYTRTMNGSSDF
LLIQYGLCAFYWDEKKKHYMNDTYNFYLYPRGRPGPDRMFLCQSSSLDFLASNGFDFNKL
IREGISYMTASTEAKLRESLIERQQTYSKEKDAVRIPDENKQQIEDICKKVKDFIDNKTE
DEMEIDRCNAFIRMLLFQELKARFKDDVMIDTKILENKNRVLKVIRKKADMEDQDTIRKK
REWDELEEAVGFSKVAKMISQSEKLVVGHNMLLDVLHTLGHFFQQLPGDYTSFKEFTHCM
FPKLLDTKYMSSLPPFKDKLNSNVLPELLATLTEPPFTLPKVDSLEGRGYSHLDEKEHEA
GYDAYITGLCFLAMHAHLSRMRGDDSIRLVPQSATLKPFLNKLFLARTARQDSPYINLVG
ADPTPPRDHVFHLIFPKEWQRSDLNQLFSPFGAVTVHFLDDTSAYIGLDRRDQAADVMRA
LAKNGRVTLTPYVKYKSQAGGDVEMALRGERAKTDTYKLIMRNDMKSRQVVSRSPIAVPR
TPPQFPTSPAPLPQKVSRTRSNSTSMTSPPASTRKRTSSGVFQVDESEPLPKKPEVSPRQ
PDTPRPRADPANGRKKTDAAQPDKKDTIAKKKDVPEKKKIDNVDNKSDKVIEKFDSKAKS
NCVTAFKESDSWD
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggaggttgttcgtaagaattttaaggagacattgcctttaataaaggattcaatagag
aaagctgacttcttatctatagatgcggagtttacaggtcttataaatggtcgggatgtg
tctatttacgattcgccggaagactactacacccgaaccatgaatggttctagtgacttt
ttactgatacagtatgggctatgtgcattttactgggacgagaagaagaagcattacatg
aatgacacgtacaatttttatttgtaccctcgtggacggcctggccctgatagaatgttc
ctctgtcagagttccagcttagatttcttggcgtctaacggatttgacttcaacaagctt
ataagagaaggtatatcgtacatgacagcttcaactgaagcaaagcttagagaatccctg
attgagagacagcagacatattctaaggaaaaagatgcagtcagaataccagatgaaaat
aaacaacaaattgaagatatttgtaaaaaggtaaaagacttcatagacaacaagacagaa
gatgagatggagattgacagatgcaacgcgttcatcaggatgctgctcttccaagaactt
aaggctcgcttcaaagacgatgttatgattgataccaagattctagaaaataagaataga
gtgctgaaagtaatccgtaagaaagctgacatggaagatcaggacacgataaggaaaaag
agagaatgggatgaactggaagaggcagttggcttctctaaagttgccaagatgatcagt
cagtctgaaaagctggtggttggtcacaacatgttactagatgtacttcacacactgggc
cacttctttcaacaactgcccggtgactacacctcgttcaaagagttcacacattgtatg
ttccccaaattattagacacaaagtacatgtcgagtttgcctccgttcaaagacaagctc
aattcaaatgtgctgccagagttattggccaccctcactgaaccgcccttcactttgcct
aaagttgattccctcgaaggccgcggctactctcacctagacgagaaggaacacgaagca
ggttacgacgcgtacatcacgggcctctgcttcctcgccatgcacgcgcatctgtcgcgc
atgcgcggcgacgactccatacgattggtcccccagtctgctacactcaaacctttcttg
aataaactgtttttggcaagaacggcaaggcaggatagcccgtatattaatttggtgggg
gctgatccgacaccaccccgtgatcacgtgttccacctcatcttccccaaggaatggcag
agaagtgacctcaaccagctgttcagtcctttcggcgcggtaacagtgcatttcctagac
gacacgtcggcgtacatcggactggaccgtcgcgaccaggcggctgacgtcatgcgggcg
ctggccaagaacggacgcgtcacgctcactccctatgtgaagtataagagccaggctggt
ggagatgttgagatggcgcttcggggcgagcgggccaaaacggatacgtataaactaata
atgaggaatgacatgaagtcgcggcaagtggtgagccggagcccgatagcggtccctcgg
acgccgccgcagttcccgacgagccccgcgccgttgccgcagaaagtcagccgcactcgc
tccaacagtacttcgatgacctcgccgcccgcctctacaagaaagagaacctcctccggg
gtcttccaagttgacgagtcagaacctctacccaagaagccagaagtgtcgccccgccag
cccgacacgccgcgccctcgcgccgacccagcgaacggacgcaaaaagactgacgcagca
caacccgacaaaaaagataccatcgcaaagaaaaaagatgtcccagaaaagaaaaagata
gacaatgtagataataaaagtgataaagtaattgagaagtttgacagcaaagctaagtcg
aactgtgtgactgctttcaaggaaagcgatagttgggactga

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