Helicoverpa armigera (cotton bollworm): 110378731
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Entry
110378731 CDS
T05609
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
haw
Helicoverpa armigera (cotton bollworm)
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haw03019
]
110378731
Messenger RNA biogenesis [BR:
haw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110378731
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GBP
MMR_HSR1
nSTAND3
ABC_tran
KAP_NTPase
nSTAND_NTPase5
AAA_16
DUF6079_1st
MeaB
Motif
Other DBs
NCBI-GeneID:
110378731
NCBI-ProteinID:
XP_021193791
LinkDB
All DBs
Position
16:join(7818314..7818349,7818456..7818696,7818963..7819097,7819571..7819837,7820218..7820431,7821180..7821365,7822106..7822272,7822771..7822973)
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AA seq
482 aa
AA seq
DB search
MADKKKKIFTSKESATPRRPVILKSDRETVKDQTKEKPEKEKQPTIILKTREQSAPKEER
PQSPRTIKNSTSDDCPHPCKIAQNENKEKKNIEQKPSPPLKFMSEPVKLLDENLELNTSA
LEFLHDSSTNYLVVGIIGTQGVGKSMIMNLIATNVHDQNLCTQILNSHEIPADSPFDSND
VAPLENQLEALDFAGVPEARQDKSDNLFKFKMQDIEQIERGVHCTKGVDMYITNDRVILL
DCQALWSPSLIEESNTTITARSANVVTVDCLQIASYLMAICHVLIAVQDWFTDYNFLRYI
QAAEMLKPSLSASNTVPANQEGSESTGGGESHPHLLLLHNRCQLEDYLPESLNVMQELYR
KAFQKSNLQLNSGMYMYSDTNKNGLNVDSVCNGYSIDKCGTPINLFLLPEIYSDFDNRDI
YRGHPGFEQLAKRLRWMILGVNRHQITNVPNLSEKGWFHYCSKAWETIRKCTFFMEYERF
LP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcagataaaaagaagaaaatattcacttcgaaggagtctgcaactccaaggagacca
gtcattttgaaatcagatcgtgaaacggttaaagatcagaccaaagagaagccggaaaaa
gagaagcagcccactattatactgaagactagagaacagagtgcacccaaagaggaacga
cctcagagtccaaggactattaaaaattctacatctgacgattgcccacatccatgtaaa
attgctcaaaatgaaaacaaagagaagaaaaatatagaacaaaagccgagtcctcccctg
aagtttatgtctgaacccgtgaagcttctggatgagaacctggaacttaacaccagtgca
ttggagttcctacatgactccagcactaattatttagtcgttggcattataggcactcaa
ggtgttggcaagtccatgataatgaacctgattgccaccaatgttcatgatcagaatctc
tgcacacaaatattgaattctcatgaaataccggcagacagtccatttgatagcaatgat
gtcgctccactagagaatcagttagaagctctggatttcgctggagtacctgaggcaaga
caggacaaaagtgataatctattcaaattcaaaatgcaagatattgaacagattgagaga
ggtgtacattgcactaaaggtgttgacatgtacataacaaatgacagagtcatcctcctt
gactgccaagctctgtggtcaccctcattgattgaagagtccaacacgacaataacagcc
agaagtgccaatgtggtcaccgtagactgtctgcaaatagcgtcctatctgatggctata
tgtcatgtcctcattgctgtgcaggactggtttactgactataattttttgagatacatt
caggcagctgaaatgctaaagccctccctatcagcttcgaacacggttcccgccaaccaa
gaaggttcggaatcgactggaggtggagaaagtcatccacacttactgctgctacataac
cgctgtcagcttgaagactaccttcctgaatctttgaatgtcatgcaagagctttacaga
aaagcatttcaaaaatcgaatctgcaactcaactctggaatgtacatgtacagcgacacg
aacaagaatggcttgaatgtggacagtgtttgcaacggttacagcatagacaagtgtgga
acgcctatcaacctctttctactgccggaaatatacagcgactttgataatcgggatata
taccgcggtcatccaggtttcgagcaacttgcaaaacgcctacgttggatgatcctagga
gtcaacagacatcaaatcactaatgtaccaaacctctcagaaaaagggtggttccactac
tgcagcaaagcttgggaaacaataagaaagtgcactttcttcatggaatacgaaagattc
ttaccgtga
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