KEGG   Helicoverpa armigera (cotton bollworm): 110379578
Entry
110379578         CDS       T05609                                 
Name
(RefSeq) superkiller complex protein 2 isoform X1
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
haw  Helicoverpa armigera (cotton bollworm)
Pathway
haw03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:haw00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110379578
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:haw03019]
    110379578
Enzymes [BR:haw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110379578
Messenger RNA biogenesis [BR:haw03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     110379578
  mRNA degradation factors
   3'-5' decay
    Ski complex
     110379578
SSDB
Motif
Pfam: DSHCT DEAD Ski2_N DEXQc_Suv3 Helicase_C MTR4-like_stalk bHLH_IRO3 ATPase_2
Other DBs
NCBI-GeneID: 110379578
NCBI-ProteinID: XP_063895797
LinkDB
Position
20:join(5270791..5270829,5270902..5271075,5271443..5271698,5271785..5271958,5276248..5276543,5276633..5276745,5277039..5277270,5277715..5277898,5278202..5278339,5278472..5278586,5278701..5278827,5278933..5279037,5279360..5279516,5280005..5280149,5280355..5280677,5280820..5280948,5281442..5281574,5281962..5282136,5283494..5283710,5284029..5284255,5284566..5284718,5285711..5285845,5286572..5287006)
AA seq 1393 aa
MSIDAENDFSDFKLPPIFEDLNERVKEYLLKPERLSIHQWERSQSHWHRESNVDSLFIHD
ADDFGPDTTLEVVRDPITGEITGLEEVSIPVEDDEDSLSMSRAPLPPSLATRGTTTQSPF
LPAGFEEELEKMLAEAASGDVNIDLDNEEPGKFLGEDILNTAPGSKETVLFAEDGFTLLN
APKVSEETAEDKDNVDIHVKINLEEVVDNNAHLVDIWKDEEVPEKKPHRPVKNIELDNDT
DNDNFLEATIIRPPIELPEIPVLNITSSAAKTGVTSTDWAEMIDVSQPVPEFREKIKDMA
QTYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNCTRAIYTSPIKA
LSNQKYNDFNKMFGEVGLLTGDLQINATASCLVMTTEILRSMLYCGSDVTRDLEFVIFDE
VHYINNAERGYVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRKVYVVSTPKRP
VPLCHYLYTGTGGKSKNERFLVVDQEGNFQLRGYNEAVAAKKARENEYKKNFGPKGGKMY
MNPKAEQTMWVAFIDHLKQKDKLPVVAFTLSRNRCDQNAESLMSVDLTTAKEKGHIRSFF
QKCLQRLKEPDRRLPQVIRLQRVLENGIGVHHSGILPLLKEIVEMLFQSGFVKILFATET
FAMGVNMPARTVVFDETSKYDGLQRRTLAPAEYIQMAGRAGRRGLDDTGTVIILCKEGVP
DLVTLKGMMLGIPQKLSSQFRLTYAMILSLLRAATVSVEGMMQRSFREFNQICQADNYRK
QLELAEKEYSEKCSTPLASHLAPLAAFYDTAAAYIDVLNEIMPILLNTSKVAKEMTPGKV
LIVSAGPYMNQLGVLLNNNGPRQTPYKVLVLDTKVEDNATYNFEVDENWYRMLSFSAMYD
SIGTEESTLDHTILCIAPKNIIAVTKMNLKMDPKIIIDDWEKRQMPRFKDAPVGSSCTSA
VQELSRISHAVCSGATTLEHVSLTQSLSVTTGEILSSLDKMNKCMNELKEHKKCTDIANF
KSEFAIVYERKLTERKRDKYKRLLSFENLALYPDYQRRLMVLRELSYIDEHDSVILKGRV
ACGMGTNELIISELVFRNVFTDKTPAEIAALLSCFVFQARTQVENQLTEKLAEGVKAIEQ
IDAELTAIESKYLVGQFEGQAERLNFGLVRVVYEWALEKPFAEIMDLTDVQEGIIVRCIQ
QLHELLVDVKDAAVAVGDPKLQAKMMEASTAIKRDIVFAASLYTTQKETIKLLKLNERAG
AARLKSNLRHQVASSMYREIVLSASWTSNKPQTNKIEIVDVKKSNPLKTQATENYIKPEP
KKAKAKIPPEVPEKAEKETNEKVKNKPDNNKKHDSQKKQKATGKREKKNAKNSEESKPND
VLLGQHDDWTDYA
NT seq 4182 nt   +upstreamnt  +downstreamnt
atgtctatagatgccgaaaatgatttctccgacttcaaactaccaccgatctttgaagat
cttaatgaaagggttaaagagtatcttttgaagccggaaaggttgtctattcatcaatgg
gaacggtctcagtctcattggcatcgcgagtcgaacgtcgattccttatttattcatgat
gccgatgattttgggccggacactacacttgaggtggtcagggacccaattactggagaa
ataacaggtttagaagaagtaagtataccagtggaagatgacgaggatagtctctctatg
tcccgggctcctcttcccccgagccttgctactagaggtacaactactcaaagccctttc
ttaccggctggctttgaagaagagttggagaaaatgctggctgaagcagcaagtggagat
gtcaatattgatctggataatgaggaacctggaaagtttttgggtgaagacatcctgaac
actgcaccaggatctaaggaaacggtactatttgctgaagatggcttcactctcctgaac
gcaccgaaggtgtctgaagagactgctgaggataaagacaatgttgatattcatgtgaag
atcaatttagaggaagtggtggataataatgcacatttagttgatatctggaaagacgag
gaagtaccagaaaagaaacctcaccgaccagtaaagaatatagaactggataatgacaca
gacaatgacaatttccttgaagccactattataagacctcctatcgaactaccagagatt
cctgtgctgaacattacaagctcagctgcaaagactggagtcacatcaacggattgggca
gaaatgatagatgtgtcccaacctgtgccagagttcagagaaaagattaaagacatggct
caaacttatccatttgagttagataacttccaaaaacaagcgatattaaaactagaagaa
ggtcaccacgtgtttgtagcggcgcacacgtcggccggtaaaactgttgtcgctgaatat
gcgatagccatgtccagacggaattgcaccagggcaatttacacatcaccgatcaaagcc
ttatcaaatcagaagtacaatgacttcaacaagatgtttggtgaagtgggccttctgact
ggagacttacaaatcaatgccaccgcctcctgcctcgtgatgaccacggaaattctcagg
tctatgctatattgtggctctgatgtcaccagggaccttgagtttgttatatttgatgag
gttcactatatcaataatgctgagcgaggctatgtatgggaggaagtgctaatcctcctc
ccagctcacgtgagcatagtgatgctgagcgcgacagtacccaacacgctgcagttcgcg
gactgggtgggacgcaccaagaagaggaaggtgtatgtcgtgtccacgcccaaacgaccc
gtgccgctgtgtcattatctttatacaggaactggaggaaaatcaaagaacgagaggttc
ttagtggtagatcaagaaggtaacttccaactgagaggttacaatgaagcagtggctgct
aagaaagccagagaaaatgagtacaagaagaactttggacctaaaggtggcaaaatgtat
atgaatcctaaagcggaacaaactatgtgggtggccttcattgaccatttaaaacagaaa
gataaattgcccgtggtcgcatttacattatcacgtaataggtgtgaccagaatgctgaa
agtttgatgtctgtagatttaaccactgcgaaagaaaagggtcatatccgatcgttcttc
caaaagtgcctacaaagactgaaagagcccgatagaagattaccccaggtgataagacta
caaagggtacttgaaaatggtatcggagtacatcacagcggtatattaccactgctcaaa
gaaattgtggagatgctgttccagtctggttttgtaaaaatcctattcgcgacggagaca
ttcgcgatgggcgtgaacatgccggcgcggaccgtggtgttcgacgagaccagcaagtac
gacggcctgcagcgacggacgctggccccggccgagtatatacagatggcgggcagggct
gggagaagaggtttggacgatacgggaacagtaataatcctgtgtaaggagggagtacca
gacttggtcacactgaagggcatgatgctgggaataccgcagaaactatcttcccagttc
cgactgacttacgccatgatacttagcttgttacgggcagccacagtatcagtagaaggc
atgatgcagcgttcattcagagagttcaaccaaatttgccaagctgataactacaggaaa
cagttagaacttgctgaaaaggagtattcggaaaaatgcagtacaccgctggcttcccac
ctggctcctttagcagcattctatgatacggcagcagcgtacatcgacgtattgaatgaa
atcatgccgatattgctcaatacgtctaaagtggcgaaggaaatgacgcctgggaaggta
ctgatagtatctgcgggcccttatatgaatcagcttggtgtactgttgaataataatggt
ccgcgacagacgccttacaaagtcctcgtgctagacaccaaggttgaagacaacgctaca
tacaatttcgaggtcgatgagaactggtaccgaatgctcagcttctccgccatgtatgac
tctataggcacagaagaaagtaccttagatcacacaatactatgtatagcgcccaaaaat
ataatagcagttacgaaaatgaatttgaaaatggatcctaaaatcatcatagacgactgg
gaaaagcggcaaatgcctcggtttaaagatgcgccagtgggttcaagctgcactagtgca
gtacaggaactgtcccgcatctcccacgccgtgtgctcgggcgccactacactggagcac
gtgagcctcacgcagtcgctgtccgtcaccaccggggagatactctcctcgctcgacaag
atgaacaagtgcatgaacgagttaaaagagcacaagaaatgtacggacatagcgaacttc
aagagcgagttcgcgatagtgtacgagcgcaaactgactgaacgtaaacgggacaagtat
aaacggctgctatcgttcgagaacttggcgctttacccggactaccagcggcggctgatg
gtgctgagagagctcagctatattgatgagcatgacagcgttatacttaaaggtcgagta
gcatgcggcatgggaacaaacgagctcatcatctcagagctggtcttcaggaacgtgttc
acggacaagactcccgccgaaatagcagcgctactgagttgcttcgtcttccaagcgagg
actcaggtggaaaaccagctcacggagaaactggctgagggagtcaaagccattgaacag
attgacgccgagttgacggctatcgagtctaaatatttggttggccagtttgagggtcaa
gccgaaagacttaacttcggtctcgtgagggtagtctacgagtgggcgctagagaaaccc
ttcgccgaaataatggatctcaccgacgtgcaagagggaatcatcgtcaggtgtattcaa
cagttgcatgagttattagtagacgttaaagacgcggccgtggcagtaggcgacccgaag
ctccaagccaaaatgatggaagcttccaccgctatcaagagagacatcgtcttcgctgcc
agtctatacaccacgcaaaaagaaacgataaaactgctgaagttaaacgagcgcgccggg
gctgcacggttgaaatcaaatctacgtcaccaagtagcctcttcaatgtaccgggaaatc
gtcctatccgccagttggacatctaacaaacctcaaactaacaaaatagagatcgtagac
gtaaaaaagtcgaaccctctgaaaacacaggccacagaaaattatataaaaccggaacca
aagaaagcaaaggccaagataccgcctgaagttcctgagaaagctgaaaaagaaactaat
gaaaaagtgaaaaacaagccggacaataataaaaagcatgactcacaaaagaaacaaaag
gcgactgggaagcgggagaaaaaaaatgccaaaaatagtgaggagagtaaacccaatgac
gtgcttttgggacaacacgatgactggacagattacgcgtag

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