KEGG   Helicoverpa armigera (cotton bollworm): 110379891
Entry
110379891         CDS       T05609                                 
Name
(RefSeq) LOW QUALITY PROTEIN: probable DNA mismatch repair protein Msh6
  KO
K08737  DNA mismatch repair protein MSH6
Organism
haw  Helicoverpa armigera (cotton bollworm)
Pathway
haw03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:haw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    110379891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:haw03400]
    110379891
DNA repair and recombination proteins [BR:haw03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     110379891
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_IV MutS_II
Other DBs
NCBI-GeneID: 110379891
NCBI-ProteinID: XP_063896851
LinkDB
Position
23:join(4648653..4648809,4648898..4649044,4649426..4649567,4649934..4650126,4650608..4650742,4651234..4651369,4651533..4651672,4652145..4652279,4652674..4652860,4735385..4735691,4735972..4736130,4741839..4742085,4742432..4742587,4743085..4743219,4743539..4743760,4744331..4744510,4745361..4745538,4746083..4746234,4746643..4746924)
AA seq 1129 aa
MSKRNSVGASNTLFNYFTKTPPTNKKVKSEVEVAKSPKVNSSVQNGDKEKVEKKKRERQA
TPSPEVKRNSDSEDEVPIAPKRRKRIRLNPVDSDDSDVENQADNKMDTSEVEKPSMEKKL
QDSFKYEPNQSPKAKKPSKPATKSSTSDKPSTSAPKLVEEKPISADDDNWTHCKLEWLKP
EKIRDAKKRRPDHPEYDPSTLFVPSEFYKDQTPAHRQWWEMKSSHFDCVLFFKVGKFYEL
YHMDAAVGVNELGFSYMKGEFAHSGFPESAYGRMASTLVSKGYKVARVEQTETPDMMQER
CRKTGKNSKWDKVVRREICQVTMRGAQICGLQDNGPAEPTAAYMMAIAEEESNGSSTYGI
CFVDTSIGLFHLGQFQDDKHSSRLLTTLAHYPPALIIYDRKTSHRTTKLLSTHCHSARRE
AQNLWTPDRTLKILAEKYYRTNADGEWPEGIRPFLHEGDALGLTPAANCFLAIKALGGVV
SCLTDCLLDIQILGMNQFTSYSPPDVLNKTLSQEVKVENRWEGGSTMVLDAITLRNLRIV
QDEGCLYDRLNFCSTHMGKRLLYQWVCAPSCNLSVIKERQEAVKALFENQELCQDAKSIL
TTLPDLKGYXLSEVHALGNLKRSKQHPDARAIFYEEKTYSKRKVLDFISVLNGFTAALKL
VELFSDADAKLLKRIMQFHPDGKYPDYRETLKFFKEAFNQEEAQKEGRILPGEGVDQEYD
NTLQLIQEIEAELKEYLTEQEKYFKCRLSYFGTDKKRYQIEVPEKAAAKAGADYNLEGAR
KGFKRFSTAETKDFLARMIAAEEQKTNVLKDLSRRIFEKFSSHYNQWETAVQCLATLDIL
LAFTEFARQQSGDVCLPEVTYDDEQEPYLNIVEGRHPCIPNIADFIPNDTQLSPESGLLL
LLTGPNMGGKSTLMRQAGLITVLAHLGSYVPAEQCKLSLVDRIFTRLGASDDIFSGQSTF
LVEMNETAAIVTHATVHSLVLLDELGRGTSTYDGTAIASGVCVELASRGCRVIFSTHYHS
LVHHLSSHPGIMLGHMACMVETDESTPDSEDHIPEETITFLYKLSPGACPKSYGFNAARL
AGIPKEITLRAHQISKNLEKEATCVRAFRDVVKMQNPTDVRAMLAALSI
NT seq 3390 nt   +upstreamnt  +downstreamnt
atgtcgaaacgtaacagtgtaggtgcttcaaacaccctattcaattattttactaaaaca
ccgcctacgaataagaaggtaaaatcagaggttgaggttgctaaaagtccgaaagtaaac
tcttcggttcaaaacggtgacaaagaaaaggttgaaaagaaaaagcgtgaaagacaagct
acaccatcccctgaggttaaaagaaacagcgacagtgaggatgaggtgcccattgctccc
aaacgcaggaagagaatccggctcaacccggtggactctgatgattccgatgtggagaac
caagcagataacaaaatggatacatctgaagttgagaagccatctatggagaagaaacta
caggatagcttcaaatatgaaccaaaccagtcacctaaggctaagaagccaagcaaacca
gccaccaaatcttcaaccagtgataaaccttcaacatcagccccaaagctagttgaagaa
aaacccatatcagccgatgatgacaactggactcattgtaagttggagtggttaaagcct
gagaaaatacgggatgcaaagaaaaggagaccagatcatcctgagtacgacccttctacc
ttgtttgtgccatctgagttttataaggatcagactcctgctcaccgtcagtggtgggag
atgaagtcctcacactttgattgtgtgctattcttcaaagtgggcaagttctatgagctg
taccatatggatgccgctgttggggttaacgaacttggattctcttatatgaagggtgaa
ttcgcacattccgggttccctgagagtgcatacggcaggatggcgtcaacattagtatcg
aagggatacaaagtagcgcgagtcgaacagactgaaactcctgacatgatgcaggaaagg
tgcaggaagacgggtaagaacagcaaatgggacaaagtggttcgtcgcgagatctgccag
gtgacgatgcgcggcgctcagatctgcggcctgcaggacaacggcccggctgagcctact
gctgcttacatgatggctattgctgaagaggaaagtaatggcagcagcacctatgggata
tgctttgtggacacttcaataggtttgttccacttaggccagtttcaagatgacaagcat
tcctccaggcttctcactactttggcgcattatcctccagctttgataatctacgaccgt
aagaccagtcaccgtactacaaaactgctcagcacacactgtcacagtgcccgcagggag
gcacagaacttgtggactccagacaggacgctcaagatcttagccgagaagtattataga
actaatgcagatggcgagtggcctgaagggattaggccgtttctgcatgaaggtgatgcc
ctaggcctaactccagctgcaaactgcttcctagccatcaaagctctaggtggcgtagtt
agctgcctcaccgactgtctgctagacatacagatactaggcatgaaccagttcacgtca
tactcaccccccgacgtgctaaacaagaccttatcgcaagaggttaaggttgaaaatcgc
tgggaaggcggcagtaccatggtgttagatgctataacgttgaggaatctaaggattgtg
caggatgaagggtgcttgtatgatcgattgaatttctgttctacgcatatggggaagaga
ttactgtaccaatgggtctgtgcaccgagttgcaatctatccgtgataaaggaaagacaa
gaagctgtgaaggcgttgtttgaaaaccaagaactatgtcaagatgctaagagcattctt
actactttacccgatttgaaaggctattagctaagtgaagtacatgcattaggcaatctg
aagcgttcgaaacagcatccggacgctcgtgccatattctacgaagagaaaacttactct
aagcggaaagttctagactttatatccgtgctgaatggtttcacggctgccttgaaactc
gtggaattgttctctgatgctgatgctaagctcttgaagagaatcatgcagttccacccg
gatgggaagtacccggattatagggagactttgaagttttttaaggaggcttttaaccaa
gaagaagcgcaaaaagaaggtcgcatacttcccggggagggagtagatcaggagtatgac
aacacgctgcaacttatacaggagatcgaagcagagttaaaggagtatcttactgaacaa
gaaaagtattttaaatgccggctgtcatatttcggaacagacaaaaagaggtatcagata
gaagttcccgagaaggcggcggctaaggcgggcgccgattacaacttggaaggcgccagg
aaaggatttaaaagattctctactgctgagacgaaagacttcctagcccgcatgatagca
gccgaagaacagaagaccaacgtgctaaaagacttgagccgtcgaatattcgagaagttt
tcttcccactacaaccaatgggagacggctgtacaatgcttggctacgctggatatcttg
ttggctttcaccgagttcgcgaggcagcagagcggggatgtgtgtctgcctgaagttact
tatgatgatgaacaggagccatacttaaacatagtggaaggtcgtcacccctgcatcccc
aacatagcggacttcatccccaacgacacccagctgagcccggagtcaggcctgctgctg
ctgctgacggggcccaacatgggcggcaagtccactctcatgcgccaggcggggctcatc
actgtgctggctcatctaggtagctatgtgccagcagaacaatgcaagttaagcctagta
gaccgcatattcactcgtctgggagcttcagatgacatcttctcgggacagtctacgttc
ttagtggagatgaacgaaacagcagccatagtgacacacgcgactgtacactcgcttgtg
ttgttggatgagttaggtcgcggcacatcaacatacgacggcacagctatagcttcaggc
gtgtgcgtggagttggcgtcgcgcggctgtcgcgtcatcttctcaactcattaccactcg
ctcgtgcatcatctgtcttcgcatcctggcatcatgctgggccatatggcatgcatggta
gaaacagacgaatcaaccccggacagcgaggaccatattccagaagaaaccatcacattc
ctttacaagttatccccgggcgcctgtcccaagtcctacgggtttaacgcagcccgtcta
gctggaatacctaaagaaataactttaagagcccatcaaatatctaaaaacttggaaaaa
gaagccacgtgtgtccgggcttttagagatgtcgttaaaatgcagaatcctacagatgta
agggccatgttggctgctctcagtatttag

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