Helicoverpa armigera (cotton bollworm): 110380038
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Entry
110380038 CDS
T05609
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG8
KO
K18734
protein SMG8
Organism
haw
Helicoverpa armigera (cotton bollworm)
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haw03019
]
110380038
Messenger RNA biogenesis [BR:
haw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
110380038
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
M-inducer_phosp
Motif
Other DBs
NCBI-GeneID:
110380038
NCBI-ProteinID:
XP_063893885
LinkDB
All DBs
Position
14:join(1795055..1795192,1795350..1795645,1796463..1796684,1797048..1797297,1797676..1797819,1798049..1798123,1799265..1799422,1799934..1800137,1800641..1800852,1801158..1801374,1802776..1802901,1803779..1803992,1804794..1804994)
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AA seq
818 aa
AA seq
DB search
MKVFSITDIPEFSKKERIVVVGVIGKSPYRYPNKTTRLLPSVQSKENLIECHWDERRAIL
YLHAITYLDTKRLTALAATLDEDSKSADTDADAANWLVASGDLAAESCKAIALIFHLCHI
VVLSSPTSVFDLGYLQLFKAMDAYRNEQLARSTAALVTAKTTGNWESHGRSCCPRLLFHF
RRAPNPVRKVPAALKRLEHAVEDQLYFILRKARIITNVCAKSLFAIPKNEEFVYISGEEE
SSGARELSSLVRGLAARCNAASDPGAQRPSFRQFLQTHIDMAFGEGFDDNVGKYAMSTSF
FELPSAQSWRSAAQALTPVYLSSKEEDQTSGALYDALATDVRFSQARCAKVLPIAQASYA
EGLPAHYSSQHHAHKVSVALGVLSSMARGPLARSAGARLRAACAATWRARSLCEALSLTG
HVCIEPDHDSSKEHSSGVRYVSACNCGRCKCSREDPYTLRRANLTFYAQAADECGVCVTL
QAIDFPVFQPSTPSYKAAALKGEVEEPSESAVVRASPAGSGASPSDANWSAPDALSPGSA
RDDDDDDDKSHASDTRYVVPLTRDAAEKVMSRQPSTTEYLPGMLHTASPAGLLPAFSSWS
VVCLGASSLYSHSLGLPEHLQPGFLPHTNYLLPWDCAVRLESMSAWRVSGPMRGRGKIAP
HHHLTVKIFIGFEYECPRGHRFMMSGPDTVVSGGGGGCSREAGAAGGRLAAADMPLYAAC
LCRAAPAPPLAQLMRVHVVTPKAPVHVTLDPKVQPIPGGPIFIPQPVGSPPIKLSASAYW
VLRLPYMYSDERGCLPRPRAGALQHPGMLIAPLFGLQD
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtattttccataacggacatacctgagttctcgaagaaggaacgtatagttgta
gtgggtgttatagggaaatcgccgtatcggtaccctaacaaaacaacccgacttttgcct
tctgtccagtccaaagagaatttgatagaatgccactgggacgagcgtcgcgccatcctc
tacctccatgctatcacatacctcgacacaaaacggctaacagccctagccgcgactctt
gatgaagactccaagagtgctgacactgatgctgacgctgccaactggctagtggcgtca
ggggacctggcagccgagtcctgcaaggctatagcgctgatattccacctgtgtcatatt
gtggtgctgtcttctcctacttccgtgtttgatctgggctatctccagctatttaaggcc
atggatgcttacagaaacgagcaactagcgcgcagcaccgcagccctagttacagcaaag
acgacaggaaactgggagtctcacggacgtagttgctgcccccgcttattgtttcacttc
cgccgcgcccccaaccctgtgcggaaggtacctgcggcgctgaagaggttggagcacgcg
gtggaagatcagctgtactttatactgaggaaggctaggattattactaatgtttgcgca
aagtccctattcgcgatcccaaagaacgaagaattcgtatacataagcggcgaggaggag
agctcaggggcccgcgaactaagttccctagtccgaggcctcgcagcccggtgtaacgcg
gcctccgacccgggggcccagcggcccagcttccgacagttcttacagactcatatagac
atggcgtttggagaaggctttgatgataatgtcgggaagtatgctatgagtacgtcgttc
ttcgagctaccaagcgctcagtcctggcgttcagccgcccaagctctgaccccggtatac
ttatcaagcaaggaggaggatcagacgtccggcgccctctacgacgcgctcgctactgac
gtgcgattctcacaagcgaggtgtgctaaggttttgccaatagcgcaagcatcgtacgcg
gagggtctgcctgcgcattattccagtcaacatcacgcacataaagtgagcgtggcgctg
ggcgtgctgagcagcatggcgcgcgggccgctggcgcgctcggcgggcgcgcgcctgcgc
gccgcgtgcgccgccacgtggcgcgcgcgcagtctgtgcgaggcgctgtcgctcactggg
cacgtctgcatcgagcccgaccatgacagcagcaaggaacactcgtcaggagtccgctac
gtatcagcctgcaactgcgggcgctgcaagtgttcgcgcgaggacccgtacacgctgcgc
cgcgctaacctcacgttctacgcgcaggcggccgacgagtgcggcgtctgtgtcacgctg
caggccatcgacttccctgtcttccagccctccacgcctagttacaaagcggcagcctta
aaaggcgaagtggaagagccatcagagagcgccgtggtccgcgcgtcgccggccggctcg
ggcgcttcgccctccgatgcgaactggtcggcgcctgacgcgctgtccccgggctccgcg
agagacgacgacgatgatgatgataaatcacatgcttctgataccagatatgtggtgccg
ctcactagggatgctgctgaaaaagtaatgagccgccaaccgtcaactaccgagtacctg
ccaggcatgttacacacggccagcccagcaggcctcctgccggcgttctcgagctggtca
gtggtgtgcttgggcgcgtcatcgctgtactcgcactcgctgggcctgcccgagcacctg
cagccgggcttcctgccgcacactaactatctgctgccgtgggactgtgccgtccgcctg
gagtcgatgagcgcatggcgcgtgtcgggcccgatgcgcgggcgcggcaagatcgcgccg
caccaccacctcaccgtcaagatattcatcggcttcgagtacgagtgcccgcggggacac
aggttcatgatgtcaggtccggacacggtggtgtcgggcggcggcggcggctgctcgcgc
gaggcgggcgcggcgggcgggcggctggcggcggccgacatgccgctgtacgccgcctgc
ctgtgccgcgccgcgcccgcgccgccgctggcgcagctcatgcgcgtgcacgtcgtcacg
cccaaggcgcccgtgcatgtcacgctggaccctaaggtacaaccaatacccggcggtcca
atcttcatcccccaaccagtgggttcgccgcccatcaaactctcagcctcagcatactgg
gtgctccgactcccatacatgtacagcgacgagcgcggctgcctgcctcgacccagggcc
ggagccctacagcaccctggcatgctcatagcacctctgttcggcctgcaggactag
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