Helicoverpa armigera (cotton bollworm): 110383569
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Entry
110383569 CDS
T05609
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
haw
Helicoverpa armigera (cotton bollworm)
Pathway
haw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
haw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110383569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
haw03041
]
110383569
Spliceosome [BR:
haw03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
110383569
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
PRP4
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_EML
ANAPC4_WD40
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
110383569
NCBI-ProteinID:
XP_063898862
LinkDB
All DBs
Position
30:complement(join(340102..340201,345226..345321,349036..349188,349788..349872,350639..350769,351836..352041,352703..352832,353176..353246,353607..353712,354171..354329,354766..354860,357342..357451,358163..358328))
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AA seq
535 aa
AA seq
DB search
MSDDEDVILVKKPKQVHYGSLEEQEKARLAALAAAAKEGAEDMGGKELGDIQISSEYMEL
EEEMSRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRD
LLSYLGEDAIHKKLEEEEARIERDRGREGTWYHEGPPELREARLWIARYSLPKAKLRLSK
AREELKLAGSVRAAAKQESQRKASAMSIYCSQIGDTRPISFCRFSSDSKMLITASWSGLA
KVWSVPECKELQVLKGHTCNVSGADFHPRAIMPHHFQDKVTKQKEENETEQPMETSEGTE
NPLEQSEQPSEQSEPTSELFEPSDETSDACTMATCAYDGTVHLWNFNSESPLASLSGHSP
ARVCRVHFHPSGRFLATTVFDHSWRLWDLHTATEVLHQEGHAKAVYCVAFQGDGSLAVTG
GMDAFGRVWDLRTGRCVMFLEGHLGPVLGADWAPAGHQLATAAADHQVAIVCVMFLEGHL
GPVLGADWPPPDTSSPPLLLIISCVMFLEGHLGPVLGADWPPPDTSSPPLLLIIR
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgatgaagatgtaatcttagtgaagaagcctaagcaagtccattatgggtcc
ttggaggagcaggagaaggcccggctggcggccctggcagctgccgccaaggaaggcgcc
gaagatatgggcgggaaagagctaggagacattcaaatctccagcgaatacatggagctg
gaagaggagatgtctcgtgacaagaaggcgttactcgaggagttcgagaggagacgcaag
gccaggcagctgaatgtctccactgatgatgatgaggtacgtaggagtctccggcagctg
ggggagccggtttgtctattcggcgagggcccggctgagagaagagtgcgtctgcgcgat
ttactgagctacctaggagaagacgcaatccacaagaagttagaagaagaagaagccagg
atcgagagggaccgcggcagggagggtacgtggtaccacgagggaccgcccgagctgagg
gaagctaggttgtggatcgctcggtactcattgccgaaagctaagcttaggttaagtaaa
gcccgtgaggagttaaaactagcgggaagcgttcgcgcggccgctaaacaggagtcacag
cgcaaggcgtcagccatgtctatctactgcagtcagatcggtgatactcggccgataagt
ttctgcagatttagtagtgatagcaaaatgcttatcacggctagttggtcaggtttagct
aaagtatggtcggtccccgagtgcaaagagttgcaggtactgaagggacacacttgtaac
gtgagcggagctgatttccatcctagagctatcatgccacatcattttcaggataaggta
actaagcaaaaagaagaaaacgaaacagaacaaccaatggagacgtcagaagggacagaa
aaccctttagaacagtcagaacagccatcagaacagtcagaaccgacgtcagaacttttt
gaaccgtcagacgaaacgtcagacgcgtgcactatggctacttgtgcttacgatgggact
gtacatttgtggaattttaacagcgagtctcccctagcctctctctcagggcacagtccg
gcccgagtctgccgggtccacttccacccctcagggcggttcctcgccaccaccgtcttc
gaccactcctggcgtctgtgggacttgcacaccgcgacagaggtactgcatcaggagggt
cacgcgaaggcggtgtactgcgttgccttccagggagacggctcgctggctgttaccggt
ggcatggacgcgtttggtcgcgtgtgggacctgcgcacggggcgctgcgtcatgttcctg
gagggacacctgggccccgtgctgggcgccgactgggcccccgccggacaccagctcgcc
accgctgctgctgatcatcaggtagctatagtctgcgtcatgttcctggagggacacctg
ggccccgtgctgggcgccgactggcccccgccggacaccagctcgccaccgctgctgctg
atcatcagctgcgtcatgttcctggagggacacctgggccccgtgctgggcgccgactgg
cccccgccggacaccagctcgccaccgctgctgctgatcatcaggtag
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