Halomonas sp. XH26: J4377_01875
Help
Entry
J4377_01875 CDS
T10290
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4377_01875 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxh03019
]
J4377_01875 (pcnB)
Enzymes [BR:
haxh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
J4377_01875 (pcnB)
Messenger RNA biogenesis [BR:
haxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4377_01875 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
UTA80272
LinkDB
All DBs
Position
complement(399423..400808)
Genome browser
AA seq
461 aa
AA seq
DB search
MFKGFTRLLHSPGEHLKSLLDSPESAADALSPRIIPRSEHPVSRQQISEAALKVLYRLNG
AGFDAFLVGGCIRDALLGKMPKDFDVATNATPEQVRDLFRNSRLIGRRFRIVHVRFGREV
IEVTTFRGKPQDEHGDHIAQQSDDGLLLRDNVWGNIEEDALRRDFTVNALYYNIADFTIH
DFANGARDIESRTLRLIGDPVTRYREDPVRMLRAVRFAAKLDFTIEPATEEPMYDLAPLL
LQIPPARLFDEVLKLFMSGHGLITFRLLSHYNLFGMLFPEAEEAMADAAWAEDLIEQALT
NTDKRIAEGRPVTPAFLLAAFLWAPVAHRQAELEREGMPAIPALQTAAQQVVTRQLQHIS
IPKRFGMPMRDIWELQARLPLRRGKRAFQTREHPRFRAAYDLLLLREQAGEIPRGLGDWW
NAFQQGDEHEQLRLLQKVGSDPASQGDRRRKKRRKPRKTEQ
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaaggatttacccgtttattacatagcccgggagagcacttgaaatccctgctc
gattccccagagagcgccgctgatgcgctcagtccccgtattattccgcgctccgagcac
cctgtttctcgtcagcaaatcagcgaggccgcgttaaaggtgctgtatcgccttaatggc
gctggatttgatgccttcctagttggcggctgcattcgtgatgcattgctgggcaaaatg
ccgaaagatttcgacgttgccacgaatgcaacgccggaacaggtgcgcgatctgtttcgc
aattcgcggctgattggtcggcgttttcgcattgtgcatgtgcgctttggtcgcgaagtc
attgaagttaccactttccgcggcaagcctcaggacgagcacggcgatcatatagcccag
cagtctgacgatggcctgctattgcgagacaatgtgtggggcaacatcgaagaagacgct
ctacgccgcgacttcaccgtgaatgcgctttactacaatatcgctgacttcacgattcat
gactttgccaacggcgcgcgtgatattgagtcacgtacgctgcgactgattggcgacccc
gttacccgctatcgggaagacccagtacgtatgctgcgtgcggtgcgctttgcggccaag
ctcgatttcaccatcgagccagccactgaagagccgatgtatgatctagcgccgctgtta
ctgcaaattcctcccgcccgtttgtttgatgaagtactcaagctattcatgtcgggacac
ggcttaattactttccgcttactgagccattacaacttgtttggcatgctgttccccgaa
gcggaagaagccatggcggatgctgcttgggccgaagatctgattgagcaagcgctcact
aacaccgataagcgcattgcggaaggccggccagttacgccagcctttctgctagccgcc
tttttgtgggcgccagtggcacaccgtcaagccgagcttgagcgcgaaggcatgcccgca
attccagcgctgcaaactgccgcccagcaggtagtcactcgccagttacagcatatttcg
attcccaaacgctttggcatgccgatgcgcgatatttgggaactacaggcacgccttcct
ctgcgccgtggcaaacgggcatttcaaacccgcgaacacccacgcttccgagccgcctac
gatttgctgctgttgcgtgaacaagcaggtgaaataccgcgtggcttaggcgattggtgg
aatgccttccagcaaggtgatgagcacgagcaacttcggctgctgcaaaaagtgggaagt
gatccggcaagccagggggaccgtcgacgtaaaaaacgacgcaaaccacgtaaaacagag
cagtaa
DBGET
integrated database retrieval system
