Halomonas sp. XH26: J4377_02820
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Entry
J4377_02820 CDS
T10290
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03030
DNA replication
haxh03430
Mismatch repair
haxh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4377_02820 (dnaE)
03430 Mismatch repair
J4377_02820 (dnaE)
03440 Homologous recombination
J4377_02820 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
haxh03032
]
J4377_02820 (dnaE)
03400 DNA repair and recombination proteins [BR:
haxh03400
]
J4377_02820 (dnaE)
Enzymes [BR:
haxh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
J4377_02820 (dnaE)
DNA replication proteins [BR:
haxh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
J4377_02820 (dnaE)
DNA repair and recombination proteins [BR:
haxh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
J4377_02820 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UTA80437
LinkDB
All DBs
Position
598123..601626
Genome browser
AA seq
1167 aa
AA seq
DB search
MTVPFVHLRLHSEYSLVDGLVKLKSLVSTTAERGMPALALTDEANLFGLVKFYKAAQGAG
LKPIIGSDLWLYNPHDEAHPYRITLLAMNDVGYRNLTELISKGWTDGQRQGRAILDKQWV
LAQSEGLIALSGGREGEIGRHLLSDHEREARELLEEWQRAFPDRFYLELIRTGRPLEEDC
VHASVKLAIESNTPVVATNDVRFLEREDFWAHETRVAIGEGKALDDPRRERRYTEEQYLK
SPEEMAALFADIPEALENSVMIAERCSVDVRLGEIFLPEFEIPEGMTQDEFFRKVSHDGL
TERLDFLFPVEQYPRDSDAYREIDQRYRDRLEFELNVIIQMGFPGYFLIVMDFIQWAKDN
NVPVGPGRGSGAGSLVAYAQKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDKV
IEYVANRYGRNAVSQIVTFGTMAAKAVVRDVARAQGRPYSLGDKLSKLIPFEVGMTLAKA
IEQEPALKEFIGNDDEAEEIWEMALKLEGTTRGTGKHAGGVVIAPTKLTDFSPLLCDEDG
SGLVVQFDKNDIEDAGLVKFDFLGLRTLTIIDWALEMVDKVRGVNGQAPLNIDAIPLDDS
KTFEMLKRAETTAVFQLESRGMKELIKRLLPDSLDDMIALVALFRPGPLQSGMVDDFINR
KHGRAEVSYPHPDYQHDLLKPVLSPTYGIILYQEQVMQIAQVMAGYSLGQADMLRRAMGK
KKPEEMAKQRSGFMEGCAANGIDKDLAGNIFDLVEKFAGYGFNKSHSAAYALVSYQTAWL
KAHYPGPFMAAVMSTEMDNLDKVVPLIEECRHLKLTVTPPDVNVGGYKFTVDTEGRVVYG
LGAIRGVGEGPIGAIVEARSTDGPFKDLFDFCRRLDPKRMNKRTLEALIRSGALDNLGPN
RAVLSAAMEDALKAAAQNHANQNLGMLDMFGDAFTAEEEETDPYAEYQSAREWTDRERLS
GEKDTLGLYLTGHPIDEYERELKRFVSTRISDLKASREPQRVAGLVVAMRTMKSKRGDTM
AFITLDDRTGRIEASLFGELFDQLRGQIESDQVIIVEGEVSNDDFSGGLRLRGKDVTPMV
TARIRYGEAVELALDAEQINGRLVDSLRESLTPYRDTGGLPVRLQYRHSAAVGWLALADE
WKVAPSDDLLLALRDVQGQVGVQLRYR
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgacggttccgtttgttcatctacgtttgcacagtgaatactccctggttgatggcttg
gtaaaactcaagtcactggtcagtaccaccgctgagcgcgggatgccggctctggcctta
accgatgaagctaacttgtttggtttggttaagttctacaaagcggcgcagggcgctggt
ctcaagcccatcatcggtagcgacttatggctgtacaacccccatgatgaggcccatccg
tatcgcattacgctgctggcgatgaacgatgttggttaccgcaatctcaccgaattgatt
tctaaggggtggaccgatggccagcgccaagggcgagccattctggacaaacagtgggtg
ctagcgcaaagcgaaggactaattgcgctatcaggcggacgtgaaggcgagataggtcgt
cacttgctgtctgatcatgaacgcgaagctcgggagctgttggaagagtggcagcgcgcc
tttccagaccgtttttatttggagttaatccgtaccgggcggccgcttgaagaagattgc
gttcacgcgagtgtgaagctggcgattgagtcgaataccccagtggtagcgaccaatgac
gtgcgctttttagagcgggaggacttttgggcacacgaaacccgcgttgccatcggcgaa
ggcaaggccttggatgacccgcgccgtgaaagacgctacaccgaagagcagtacctaaaa
agccctgaggagatggcagcactgtttgctgatattcctgaggcgcttgagaacagcgtt
atgatcgccgagcggtgtagcgttgatgtacggttgggcgaaattttcctacctgagttc
gaaattcccgaagggatgactcaggatgagtttttccgcaaagtctcccatgacggcctc
actgaacggttagattttctgttccctgttgaacagtacccccgcgatagcgacgcatat
cgcgagattgatcaacgttaccgtgacaggcttgagtttgagctgaacgttattatccaa
atgggctttcctggttacttcctgatcgtgatggactttatccagtgggccaaggataac
aacgtgccagtcggcccagggcgtggttccggtgcgggctcattagtggcttacgcgcaa
aaaattaccgatcttgaccccattggctacgatctgctgttcgaacgctttcttaatcct
gagcgtgtctccatgcccgactttgacgtcgatttttgcatggaaaaacgcgacaaagtg
attgagtatgtagctaaccgctatggccgcaatgcggtatctcagattgtcacctttggc
accatggctgcaaaagcggtggtgcgcgatgtggcgcgcgctcaggggcggccttactcc
ttaggcgataagctttctaagctgatcccctttgaagtgggtatgacgcttgccaaagcg
atagagcaagaaccggcactgaaagagtttatcggcaatgacgacgaagccgaagagatc
tgggaaatggccctcaagctagagggcaccacccggggtaccggtaagcacgcggggggc
gtcgtcattgcgcccaccaaactgaccgatttctcgccgctgctgtgcgatgaagatggc
tctggcctggtggtgcagttcgataaaaacgacatcgaagacgctgggctagtaaagttc
gactttttgggcttgcggacgctgacgattatcgactgggcactggaaatggtcgataaa
gtgcggggggtaaacggtcaagcgccacttaacatcgacgctatcccgctggacgacagc
aaaacgtttgagatgcttaaacgcgcggaaaccaccgccgttttccagttggaatctcgt
ggtatgaaggagctgattaagcgcctgctgccagactccctcgacgatatgatcgccctg
gtggcgctattccgcccaggcccgctgcagtccggcatggttgatgactttatcaatcgt
aagcacggccgtgccgaagtctcttatccccacccagattatcagcatgacctgttaaag
ccggtacttagcccgacatacggcattattttgtaccaagagcaggttatgcagattgct
caggtaatggccggctattctttggggcaggcggacatgctgcgccgcgccatgggtaag
aaaaagcccgaagagatggccaagcagcgttcaggctttatggaaggctgtgccgccaac
ggtatcgataaagaccttgctggcaatatctttgatcttgttgagaaattcgccggttat
ggttttaacaaatcgcactctgccgcttacgccttggtgtcttatcaaaccgcctggttg
aaagcgcactatcctggcccgtttatggccgccgttatgtcaacggaaatggataacctg
gacaaggtggtgccgctaattgaggagtgccgccacctcaagcttaccgtcacaccgccg
gatgttaatgtcggtggctacaagttcaccgttgatacggaagggcgcgtggtttacggc
ctgggtgccattcgcggtgtgggtgaaggtccgattggtgcgattgttgaagcccgtagc
accgatggtccatttaaagatcttttcgatttttgtcgccgccttgatccaaaacggatg
aacaagcgaacgctagaagcgctgattcgctctggcgcactggataatcttggccctaac
cgggcggtgctttccgccgcgatggaagacgccttgaaagcggctgctcaaaaccatgcc
aaccaaaatctgggtatgctggatatgtttggcgatgcgtttacagcggaagaggaagaa
acggatccttatgctgagtatcagagcgcccgtgaatggacagatcgtgagcgtctttct
ggtgaaaaagatacgctgggtctctatctgaccggccatcccattgatgaatatgagcgt
gagctaaagcgctttgtctctactcgcattagtgatttgaaggcctctcgtgagccgcag
cgggtggctggcttagtggtagccatgcgcaccatgaagtccaaacgtggcgataccatg
gcgtttatcacgctggatgatcgcaccgggcgtatcgaggcctctctatttggcgagcta
tttgatcaactgcgaggccaaatcgaatctgaccaagtgattatcgttgaaggtgaagta
tccaacgatgacttctccggcggtttgcgcttgcggggtaaagacgttacgccgatggtg
accgcgcggattcgctatggcgaagcagtggaattagcattagatgctgaacagatcaac
gggcgtttagtcgatagcctgcgtgagagtcttacgccataccgcgataccggcgggttg
ccggtacggctacagtatcgccactcagcagcggttggctggctggcgctggctgatgaa
tggaaagtagctcccagcgacgacctgctgttggcccttcgtgatgtgcaggggcaggtt
ggcgttcagctacgttaccgctaa
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