Halomonas sp. XH26: J4377_03080
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Entry
J4377_03080 CDS
T10290
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4377_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxh03019
]
J4377_03080
03400 DNA repair and recombination proteins [BR:
haxh03400
]
J4377_03080
Enzymes [BR:
haxh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J4377_03080
Messenger RNA biogenesis [BR:
haxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4377_03080
DNA repair and recombination proteins [BR:
haxh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
J4377_03080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
UTA80485
LinkDB
All DBs
Position
659386..661395
Genome browser
AA seq
669 aa
AA seq
DB search
MTSLSPQQTLKAVFGFDDFRGGQQAVVSRVLDGHSTAAIFATGAGKSLCYQLPALHLPHL
TLVVSPLLALMQDQLAFLARHGVAAASIDSTQDRATTRDVMERAKNGELKILMVSVERLK
NERFRHFLRQVQISLLVVDEAHCLSEWGHNFRPDYLKLPDYQRNFAIPQVLLLTATATPA
VIADMREKFSIVPENVITTGFYRANLELLVVPSMENRQQQLIDWLMPQMPPGNEAPTIIY
VTLQQTAEQVASALAAQGISSQAYHAGLDSARRDDIQRQFMNGESPCIVATIAFGMGIDK
GNIRNVVHFDLPKSIENYSQEIGRAGRDGLPSTCLTIAGRDGLRVLENFVYGDTPEYAGI
LRLLEEISSAGQAPDRQWEVLLNTLSRDTNIRLMPLKTLLVRLEMHGIIAPRFAFLAEYR
LRYHIEPTALVGRFAGERAAFVRLLIDNIAIARTWGTVDFERLHQAGQAQQIDASRARVI
TALEYFQDKGWLTLEGKRMTDVYEICQPEFSVEAMASQLFNECLDRERIEIERLHSMLAL
FESESCLTRRLAEHFGDTTFDGPLGTEQGRCGHCSVCYGNPVRLPDATPLPALSENDFIR
YASPLIERHTEQFGQPPNVQRLAHFLCGLTMPIFTPLKARGLNGFAVFEQRAYPEVRQWA
ERCLASSCS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgctatcaccgcagcagacgctgaaggcagtattcggatttgatgattttcgt
ggtggccagcaggcggtggtgtccagagttttggatggacactctaccgcagcgattttt
gccaccggggcggggaagtcactctgttatcagttgcctgcgcttcatcttccgcatctg
acccttgtggtatcgccgctgctggcactgatgcaggatcagctcgctttcttggcacgc
catggtgttgcagctgccagtattgattctacccaagatcgcgctacgacccgtgatgtg
atggagcgcgccaaaaacggtgagctaaaaatcctcatggtgtcggtggagcggcttaag
aacgagcgctttcggcactttctacgccaggttcaaatatcgttgctagtggttgatgaa
gcacactgtctctctgagtggggacataacttccgtcccgattaccttaaactgcccgat
tatcagcgtaattttgctattccccaggtgttgctactgactgccacggccacgccagcg
gttatcgctgatatgcgtgagaagttttccatcgtaccggaaaatgtcattaccactggc
ttttatcgcgctaacttagagcttctggtggtgccctccatggaaaatcgtcagcaacag
ctgattgattggcttatgccgcaaatgccgcctggcaacgaagcgcctacgattatttac
gtcaccctgcagcaaaccgccgagcaggtggcaagtgcgctggccgcccaggggatttct
tcccaggcgtaccatgcggggctggattcagcccgccgcgacgacattcagcgccagttt
atgaacggcgaatcgccctgtattgtcgctaccattgcctttggcatggggattgataaa
ggcaatatccgcaacgttgtgcactttgatctgcctaaatcgattgagaattacagtcag
gaaattggtcgggcagggcgcgatggactgccttccacttgtttaaccattgccggacgc
gatggtctgcgggtgctggagaacttcgtttacggcgacacgcctgagtacgcgggtatt
ttgcgcttactggaagaaatttcatcagctggtcaagcgccagatcgccagtgggaagta
ctgctcaatacgctttcccgagataccaatatccgcctgatgccacttaaaacgctactg
gtgcggctggaaatgcacggcattattgcgccgcgctttgcgttcttagccgagtatcgg
ttgcgctaccatattgagcctaccgccttggtggggcgttttgcaggagagcgggcggcc
tttgtacgtttgttgatcgacaatatcgctatcgctcgcacctggggaacagtggatttt
gagcggctgcatcaggctgggcaggcacagcaaatcgatgcttcccgtgcccgcgtcatt
accgcgcttgaatacttccaggataaaggctggctgaccctggaaggtaagcgtatgacc
gatgtgtatgaaatttgtcagccggaattttcggtcgaggcgatggcaagccagttattt
aatgagtgtctagatcgggagcgaatcgaaattgaacggttgcactccatgctggcactg
tttgagtcggaaagctgcctgactcggcggttagctgagcattttggggacaccaccttc
gatgggccacttggtaccgagcagggccgctgtggccactgttcggtatgctacggcaac
ccggttcggctgccggatgcgacgccattacccgcgctgtctgagaatgattttatccgc
tatgcctcaccgctgattgaacgccacaccgagcagttcggccagccgcccaatgtccag
cggctggcacacttcttatgcggtttaactatgccgatttttaccccactcaaagcccgc
ggccttaacggcttcgcggtctttgagcagcgtgcctaccctgaagtgcggcagtgggca
gagcgctgtttagctagctcctgcagttaa
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