Halomonas sp. XH26: J4377_04460
Help
Entry
J4377_04460 CDS
T10290
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
haxh Halomonas sp. XH26
Pathway
haxh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
haxh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J4377_04460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
haxh03019
]
J4377_04460
03009 Ribosome biogenesis [BR:
haxh03009
]
J4377_04460
Enzymes [BR:
haxh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J4377_04460
Messenger RNA biogenesis [BR:
haxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J4377_04460
Ribosome biogenesis [BR:
haxh03009
]
Prokaryotic type
rRNA helicases
J4377_04460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UTA80743
LinkDB
All DBs
Position
971285..972997
Genome browser
AA seq
570 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVEAQGYEIPSPIQAQTIPALLEGRDMLGQAQTGTGKT
AAFALPLLSRLELTRREPQVLVMAPTRELAQQVAASFSKYGQNLKGLEVAILCGGQEYRE
QLGALKRGAQVIVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVNPVKVAIESRTTTGENIEQRIVRVDGGAKLEAVA
RILEVEPVDAAIVFVRTRAACTTLVEQLTARGVNAAGLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVPRITHVINYDLPQDAEAYTHRIGRTGRAGRSGIAITFAGFREGRKV
GWMEQATGQKMTEMPLPDEAAIRAHRDDVFHHRVVAALTKGAEEQRALVERLVEEGHDAV
ELACAFAAMARADEAPIGRLQAPRKERTTRDSAPGGKPGGRRERSSAPSEGMIRYRVSVG
HKDGVKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSGLPSTILAKMARARVAGRP
LEISEDSAPERAPRRRRDDGDAPVRRRERA
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctctgctgttgaagcacaaggctacgaaattccctcgccgatccaagcgcagacgatt
cctgcgttgctggaaggccgcgatatgctgggccaagcacaaaccggcaccggcaaaacc
gctgcatttgcattgccattgttatcgcgtttagaacttacccgtcgcgagcctcaagta
ctggttatggctccgacccgtgaacttgctcagcaggttgcggcttcattcagtaagtat
ggccaaaacctcaagggtcttgaagtcgctatcctttgtggtggccaagaataccgtgaa
cagttaggcgcgctaaagcgcggtgcccaggttattgttggcacccctggccgtattatc
gaccaccttgatcgcggtagtctgaaactcgacggtctttcggcactcgtgctggatgag
gctgacgaaatgctgcgcatgggctttatcgacgacgtaaaacgcgtggttgccgatacc
cctaaagatgctcagcgtgtgttcttctcggcaacgctgccgactgaaattgaacgcatt
gttaaccgctatctggttaatccggtaaaagtcgcgattgagtcgcgcacgacgaccggt
gaaaacattgaacagcgtattgtacgcgtcgatggtggcgctaagcttgaagcagtggca
cgcatccttgaggttgagccggttgatgccgctattgtcttcgtgcgtactcgtgctgct
tgtaccacgctggttgaacagctgacagcccgtggcgttaatgccgctggcttgtctggc
gatctagaccaaagcctgcgtgagcgcaccattacacgtctcaagcgtggcaaggttgat
gtgctgattgcgaccgacgtcgctgctcgtggtcttgacgttccgcgtattacgcacgtt
atcaactacgatctgccgcaagacgcagaagcctatacccaccgtatcggtcgtaccggt
cgtgcgggccgtagcggtatcgcgattacgttcgctggtttccgtgaaggccgtaaagtg
ggctggatggagcaggctaccggtcagaaaatgactgaaatgccgctgccagacgaagcc
gctattcgcgctcaccgtgatgatgtgttccatcatcgcgttgtagcagccctgaccaaa
ggtgctgaagagcagcgcgcactggttgagcgcctggtagaagaaggccatgatgccgtt
gagctagcttgtgcttttgccgcgatggcacgtgctgacgaagcgccgattggacgcttg
caagcaccgcgtaaagagcgcactacgcgtgatagcgcgcctggtggcaagcccggtggc
cgtcgcgagcgctcaagcgcacctagcgaaggtatgattcgttaccgtgtttctgttggc
cataaagatggcgttaagcctggtcaactggttggtgcactggcgaacgaaggtggcatc
gaaggcgcccgtatcggtcgtattgatatccgcaacgctttctctgtagttgaactaccc
agtggcctgccttccactattctggcgaaaatggcgcgagcccgcgttgctggtcgcccg
ttagaaattagtgaagacagtgcacctgagcgtgctccacgtcgtcgtcgtgatgacggt
gatgcacccgttcgtcgccgcgaacgcgcttaa
DBGET
integrated database retrieval system
