Halomonas sp. XH26: J4377_06120
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Entry
J4377_06120 CDS
T10290
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
haxh Halomonas sp. XH26
Brite
Enzymes [BR:
haxh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
J4377_06120 (hrpA)
Messenger RNA biogenesis [BR:
haxh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
J4377_06120 (hrpA)
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Ortholog
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GFIT
Other DBs
NCBI-ProteinID:
UTA81046
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Position
1325438..1329451
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AA seq
1337 aa
AA seq
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METEPNVTTDTQTSHADAQNAYPLTALDEEIRHVMLRDAQQLARRVAGLKRRQRDRKPID
HGVQQVQRDLEKAKRLLANREALKVALDYPAELPVVERREDILNAIRDHQVVVVAGETGS
GKTTQLPKICLELGRGRKGVIGHTQPRRLAARSVAGRLAEEMSVPLGEQVGYQVRFNDQS
SPNTLVKLMTDGILLAETQHDSLLLRYDTLIIDEAHERSLNIDFLLGYLKRLLPKRPDLK
VIITSATIDVDRFAAHFGSANAPAPVVEVSGRTFPVDVHYRPLARSEEDEDDRTLQEGIL
HAVREIETIEREKGWLHGPRDVLVFLPGEREIRETADSLRRADLTGTEILPLYARLSNEE
QNRVFASHKGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYRAKIQRLPIEPISQA
SANQRKGRCGRVAEGVCIRLYDEEDFLSRPAFTDPEIQRTNLASVILSMLALKLGSIEAF
PFVDPPDSRFVKDGFRLLFELGAVDDQQRLTPLGRKLAKLPIDPRLARMVLAGAERGSLR
DVLIVVSALAIQDPRDRPADKRQAADQAHQRWHDPDSDFVALLNLWHGIENAREALSGNQ
LRRWCREHYINYLRMREWHDTFRQLRQLLRDMDIDVPAPLPRDEDESEEQAKQARRKTSG
KLHQALLSGLLSNLGTLLENREYLGARNRKFMIHPGSGLAKKTPKWVMAFELIETTKLFA
RTVAKIDPQWIEPQAQHLIKSSYSEPHWEMKRAQVVAFEQVTLFGLPIVARRRVHYGPIA
PQESRELFIRRALVEGEFQTKGEFFAHNRALIEEVEALEDRARRRDILVDEEALFAFYDE
RLPHDIVNGKGFEHWRKQVERESPDLLKFDIEALKARDANDVTQAQYPDHLTLAGVAYPV
SYHFDPDAEDDGVTLTVPAAMLPQLPVHALEWLVPGLLREKCIALLKSLPKSIRRQVVPI
PDWVDAALEMLVPDQRPLTEALGEFIRRRTGTRVHPDDWRLDLLAPHLIMNVRVVDHAGK
TLGQGRDVRALERRFEEAASRGAQALAEQANQAPALESLPSEPLPESRVTTQAGIRVEAY
PALVAEDSRFKVALFDHPAKAAAAHQMGVARLAISQQPDQVKAIKRLPGVEKCALLFAKV
GNKNELVDDLLLAVFTQVVAKHPLPRSEQALKQRLQTSEESLLAHAQTLLTHVEAALKGH
LAVTKILKGKLNFALALVYSDVSAQMKRLVYPGFIRDAGEWLTEYPRYTEAALIRLEKAA
RERGRDQMLMHDVQALETRFDARRKSERRGDAEDPELVAFGWWIQELRVSLFAQQLGTKM
PVSVKRLEKRWEELISV
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccgagcctaacgtgaccaccgacacgcaaacttcccatgctgacgcccagaac
gcttatccactcaccgcattagatgaggagataaggcacgttatgctgcgtgatgcacag
cagctagcgcgtcgtgtggcaggccttaagcggcgtcaacgagacagaaaaccgatcgac
cacggtgtccaacaggttcagcgcgaccttgaaaaagctaagcggctgcttgctaaccgt
gaagcactgaaggtggcgctggattatcctgccgagttgcctgtagtagaacgacgagag
gatatcctaaacgctatccgcgaccatcaggtagtagtcgtggcgggggagacagggtcg
ggtaaaaccactcagctgcctaaaatttgtctagagcttggccgtgggcgtaaaggggtg
attgggcatacccagccacgtcgactggcagcgcgtagcgttgccgggcggttagcggaa
gaaatgagcgtgccgctgggtgagcaggtgggctaccaagtgcgcttcaatgatcaaagt
tccccgaatacgctcgtaaagctgatgacggacggtatcctgctggcagaaacccagcac
gattctttgctgctgcgttacgacacgctgattattgatgaggcgcacgagcgcagtctt
aacatcgactttttgctggggtatttaaagcgcctgctgccgaaacgtcctgatctaaaa
gtcattattacctcagccaccattgatgtagatcgttttgctgcccatttcggcagtgcc
aacgcgcctgcgccggtggttgaagtctctggccgcacttttcccgtcgatgtacattac
cgcccgctggcgcgtagcgaagaggatgaggatgaccggacactgcaagaaggcattttg
cacgcagtgcgcgaaatcgaaaccatcgagcgtgagaaaggctggctgcatggtccacgc
gacgtgctggtgtttttacccggggagcgtgagattcgtgagacagccgattcgctgcga
cgggccgacttaaccggcaccgaaatattgccactctatgctcggctttccaacgaagag
caaaatcgtgtcttcgcttcccacaaagggcggcgaattgtgctggctactaacgttgct
gaaacctcgctcacggtaccgggaattcgctacgttattgatcctggtttggtgcgtatc
agccgctacagctatcgggcgaaaatacagcgactaccgattgagccgattagccaggcc
agcgccaatcagcgtaaaggccgctgtggccgtgttgcggaaggggtatgtattcgtctt
tatgatgaagaggatttcctatcgcggccagcgtttaccgacccagaaattcagcgtacc
aatttagcgtcagttatcctttccatgctggcgctgaagcttggcagtattgaagctttt
ccctttgtcgacccgcccgatagccgattcgtaaaagatggctttcgtttgctgtttgag
ctgggagcggtagacgaccagcagcgcctgaccccgctgggccgcaagctcgctaagcta
cccatcgacccacgcctagcgcgcatggtgctggcaggtgccgaacgaggcagcctgagg
gatgtattgattgtggtatcggctctggcgatacaagaccctagagatcggcctgctgac
aaacgccaagcggcggatcaagcgcaccagcgctggcatgatcccgattctgatttcgtt
gcgttgctaaacttatggcatggcatcgaaaatgcccgcgaggctctctcaggcaaccaa
ctgcgtcgctggtgccgcgagcactatattaactatctgcgcatgcgcgaatggcatgac
acgttccgtcaattgcgtcagctgctgcgcgatatggacatcgacgtgcccgcaccgctg
cccagagatgaagacgaaagcgaagagcaagccaagcaagcgcgtcgtaaaacgtcagga
aaactgcaccaagcgctgttatctgggctgctttctaacctgggaacactactggaaaac
cgtgaatacctgggcgcgcgtaatcgtaagtttatgattcaccccggttcagggctggcg
aaaaaaacgccgaagtgggtaatggcgtttgaactgattgaaaccactaaactatttgcc
cgtacagtggcgaaaattgacccccagtggattgagcctcaagcgcagcacttgataaaa
agcagctacagcgagccgcactgggaaatgaaacgtgcccaggtagtcgcgttcgagcaa
gtaacgctgtttggtctgccgatcgttgcccgtcgccgtgtgcattatggccctattgct
ccccaagagtcccgggagctgtttattcgtcgtgcgttagtggaaggcgaatttcagact
aagggggagttttttgcccataaccgagcgctgattgaagaagtcgaggcactcgaagat
cgtgcacgtcggcgcgatattctggtcgatgaagaggcgttgtttgctttttatgatgaa
cgactccctcacgatatcgttaatggcaaagggtttgagcattggcgcaagcaggtggag
cgtgagtctcctgacttattaaaattcgatattgaggcacttaaagcgcgggatgccaac
gacgttactcaggcgcagtaccctgatcacctaacgttggcaggggttgcctatccggtt
agctatcacttcgatcctgatgcagaagatgatggcgttacgctgaccgtacctgccgct
atgctgcctcagttgcccgtgcatgcccttgagtggttagtaccggggttgctgcgcgaa
aagtgtattgcgctacttaaatccctgccgaaaagcattcgtcgtcaagtggtccccatt
cccgactgggtcgatgcggcactggaaatgcttgtgcctgatcagcgcccactgaccgag
gcgcttggcgagtttattcggcggcgaacgggtacgcgggtacatcctgatgactggcgg
cttgacctgctagcaccacatttaattatgaacgtgcgcgttgttgatcacgctggtaaa
acgctgggccaggggcgtgacgtacgtgccctggaaaggcgctttgaagaagccgccagt
aggggagcccaggcgttagcagaacaggctaatcaggccccggcgcttgaaagtctgcct
agtgagccgctccctgaatctcgggtgacgacccaggcggggatccgtgtcgaagcttac
ccggcactggtggcagaagattcacgcttcaaagtggcacttttcgaccatcccgccaag
gcagcggcagcgcatcaaatgggtgtggcccgtttggcgatctcacaacagccggatcag
gtgaaagctattaagcgtttgcctggcgtggaaaaatgcgcattgttgtttgcgaaggta
ggaaacaaaaatgagttggttgatgatcttttgctggcggtgtttactcaagtagtggct
aagcatcctctgccacgttcggagcaagcccttaagcagcgcttgcaaacttctgaagaa
agcttgttagcgcatgcccaaacactgttaacgcatgttgaggcggcgcttaaggggcac
ttggcagtaaccaaaattttaaaagggaagctcaattttgcattggcgcttgtttacagc
gatgtcagcgcgcagatgaagcgattggtttaccccggttttattcgcgatgcaggtgag
tggttaacggagtatcctcgttatacagaggctgcattaatccggctggaaaaagccgcg
cgcgagcgagggcgcgaccaaatgctgatgcacgatgtccaagcattagaaacgcgtttc
gacgcgcgccgaaaaagcgaacgcaggggcgacgcagaagacccagagttggtggcattt
ggttggtggattcaggagctccgggtgtctctgtttgcccagcagttgggtactaaaatg
cccgtttctgtgaagcgcctagaaaagcgttgggaagagcttattagcgtttaa
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